View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_18 (Length: 361)
Name: NF18491_low_18
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 31828224 - 31828429
Alignment:
| Q |
1 |
tgtactttcatctcattctctgctttttcaactttaacccttcttgaagcaaccaacttcattgtttcaacacaaaaaactatattagattgaagaaaca |
100 |
Q |
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| T |
31828224 |
tgtactttcatctcattctctactttttcaactttaacccttcttgaagcaaccaacttcattgtttcaacacaaaaaactatattagattgaagaaaca |
31828323 |
T |
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| Q |
101 |
aaatctatatgaagctgtatcaacaatgagagatgataacttgaagaaaagcaaggtttgttttgtagtaataatgctaattggttttacttcaaattca |
200 |
Q |
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| T |
31828324 |
aaatctatatgaagctgtatcaacaatgagagatgataacttgaagaaaagcaaggtttgttttgtagtaataatgctaattggttttacttcaaattca |
31828423 |
T |
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| Q |
201 |
tatgca |
206 |
Q |
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|||||| |
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| T |
31828424 |
tatgca |
31828429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 31828476 - 31828561
Alignment:
| Q |
268 |
ctgaagctttcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatgatgt |
353 |
Q |
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| T |
31828476 |
ctgaagctttcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatgatgt |
31828561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 38124325 - 38124245
Alignment:
| Q |
269 |
tgaagctttcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatg |
349 |
Q |
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| T |
38124325 |
tgaagctttcatggccaaaaacattggtcaaaaaatggttcaatatcaagaccaaatctcaagactttcaagcagatgatg |
38124245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 38124465 - 38124421
Alignment:
| Q |
106 |
tatatgaagctgtatcaacaatgagagatgataacttgaagaaaa |
150 |
Q |
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||||||||| | | ||||||||||||||||| ||||||||||||| |
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| T |
38124465 |
tatatgaagttttctcaacaatgagagatgaaaacttgaagaaaa |
38124421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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