View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18491_low_21 (Length: 327)

Name: NF18491_low_21
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18491_low_21
NF18491_low_21
[»] chr7 (3 HSPs)
chr7 (17-310)||(44871890-44872183)
chr7 (171-310)||(44872091-44872230)
chr7 (18-110)||(44871889-44871981)
[»] chr3 (13 HSPs)
chr3 (109-310)||(47527797-47527995)
chr3 (46-308)||(47527599-47527861)
chr3 (64-298)||(47527482-47527719)
chr3 (69-166)||(47522226-47522323)
chr3 (46-298)||(47527866-47528115)
chr3 (54-301)||(47522145-47522389)
chr3 (65-190)||(47522288-47522413)
chr3 (18-227)||(47527904-47528110)
chr3 (24-157)||(47527778-47527911)
chr3 (172-310)||(47527389-47527527)
chr3 (205-306)||(47522227-47522328)
chr3 (171-310)||(47522127-47522266)
chr3 (119-194)||(47549704-47549782)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 44872183 - 44871890
Alignment:
Q  17 aaggaagcagtaacaagagcatttactttgtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctc 116  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44872183 aaggaagcagtagcaagagcatttactttgtctgcattacagtcgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctc 44872084  T
Q  117 ctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44872083 ctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatc 44871984  T
Q  217 cgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagcatcaatttat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44871983 cgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagagactgaaagaatccaaggaagaagcagcagcatcaatttat 44871890  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 310
Target Start/End: Complemental strand, 44872230 - 44872091
Alignment:
Q  171 caatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcg 270  Q
    |||||| ||| ||| ||||||||||||||   | || |||| ||||| ||||||||||||| ||||||||| |||||||| ||||||||||||| |||||    
T  44872230 caattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtagcaagagcatttactttgtctgcattacagtcgaaggagcg 44872131  T
Q  271 actgaaagaatccaaggaagaagcagcagcatcaatttat 310  Q
    || |  ||||||| |||||  ||||||| |||||||||||    
T  44872130 accgggagaatccgaggaaacagcagcaacatcaatttat 44872091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 44871981 - 44871889
Alignment:
Q  18 aggaagcagtaacaagagcatttactttgtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatt 110  Q
    ||||||||||| | ||||||||| |||||||| ||||||||| ||| ||| ||| |  ||||||| |||||  ||||||| ||||||||||||    
T  44871981 aggaagcagtagctagagcattttctttgtctccattacagtcgaaagagagactgaaagaatccaaggaagaagcagcagcatcaatttatt 44871889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 109 - 310
Target Start/End: Original strand, 47527797 - 47527995
Alignment:
Q  109 tttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccg 208  Q
    |||| |||| || |||||||  |||| |||||||  ||| || ||||||||| ||||||||   |||||||| ||||||||||||||||||| |||||||    
T  47527797 tttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaaca---atttcttcgtctccattacagttgaaagagcaaccg 47527893  T
Q  209 agagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagcatcaattt 308  Q
    |||||||| ||||||||| |||  ||||||||||  ||||||||||||||||||||||||||||||  ||||| | |||||| ||||||| ||| |||||    
T  47527894 agagaatctgaggaagcattagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcgaggaagcagcagcaacattaattt 47527993  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 46 - 308
Target Start/End: Original strand, 47527599 - 47527861
Alignment:
Q  46 gtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaa---tttatttgcctcctttacagtcgaaagagcaactgaga 142  Q
    |||| ||||||||| ||| |||| || | ||||||||| |||| ||||||||||| |||   ||| |||| |||| |||||||||||||||| |||||||    
T  47527599 gtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgactgaga 47527698  T
Q  143 aaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcatttt 242  Q
     |||| |||||||||||| ||| | ||   || | ||| |||||||||||| |||||||||||||||  |||||||||| | ||||||| |||| |||||    
T  47527699 gaatctgaggaagcagcagcaatatca---atatattcatctccattacagctgaaagtgcaaccgaaggaatccgaggtatcagtagcaagaggatttt 47527795  T
Q  243 ctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagcatcaattt 308  Q
    ||||||||||||| |||||||  |||||||||| || |||  | |||| ||||||| || ||||||    
T  47527796 ctttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaacaattt 47527861  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 64 - 298
Target Start/End: Original strand, 47527482 - 47527719
Alignment:
Q  64 ggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaaca 163  Q
    |||||||| | || |||| |||||||||||||||||||||||||||| | |   |||||  ||  ||||||||| |||| |||||||||||| ||  |||    
T  47527482 ggagcgacagagaaaatctgaggaaacagcagcaacatcaatttattcgtcctgtttactttctgaagagcaaccgagagaatccgaggaagaagtgaca 47527581  T
Q  164 acaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtag---ctagagcattttctttgtctccattacagt 260  Q
    |||||| |||| | ||  ||||||||||||| ||| | ||||| ||||||||||| |||||||| ||   | | | || |||||||||||||||||||||    
T  47527582 acaacatcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagt 47527681  T
Q  261 cgaaagagcgactgaaagaatccaaggaagaagcagca 298  Q
    ||||||||||||||| ||||||  |||||| |||||||    
T  47527682 cgaaagagcgactgagagaatctgaggaagcagcagca 47527719  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 47522226 - 47522323
Alignment:
Q  69 gaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaaca 166  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| | |||||||||| |||||||||| || |||| ||||| ||||||||||| |||||    
T  47522226 gaccgagagaatctgaggaaacagcagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaaca 47522323  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 298
Target Start/End: Original strand, 47527866 - 47528115
Alignment:
Q  46 gtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaa 145  Q
    |||| ||||||||||||| |||| |||| ||||||| |||||| ||  || || | || |||| ||| |||| |||||||||||||||| |||| || ||    
T  47527866 gtctccattacagttgaaagagcaaccgagagaatctgaggaagcattagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaa 47527965  T
Q  146 tccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctt 245  Q
    | ||||||||||||| |||||  |   |||| ||| | |||||||||| | |||| ||||  ||||||||| || ||||||| | | | | || |||||     
T  47527966 tgcgaggaagcagcagcaacatta---atttattcgtttccattacagataaaagagcaatggagagaatctgatgaagcagcatcaaaaacaatttctc 47528062  T
Q  246 tgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagca 298  Q
    |||||||||||||| ||||| ||| ||  || |||||| |||||| |||||||    
T  47528063 tgtctccattacagccgaaaaagcaaccaaatgaatccgaggaagcagcagca 47528115  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 301
Target Start/End: Original strand, 47522145 - 47522389
Alignment:
Q  54 tacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgagga 153  Q
    ||||||||||  || || || |||||||||||||||||| || |||| |||||| | || |||| || ||||||||| ||  || |||| |||| |||||    
T  47522145 tacagttgaaaaagagatcgagagaatccgaggaaacagaaggaacaacaatttctctgtctccattgcagtcgaaaaagagaccgagagaatctgagga 47522244  T
Q  154 agcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctcca 253  Q
    | |||   || ||| | |||||| ||| ||||| ||||| | ||||| || ||||||||||||| ||||||||| ||| | | || | | || |||||||    
T  47522245 aacag---cagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatcaatctattggtctcca 47522341  T
Q  254 ttacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagca 301  Q
    || | ||||||||||  ||||| ||||||| |||| ||||||||||||    
T  47522342 ttgccgtcgaaagagaaactgagagaatccgaggaggaagcagcagca 47522389  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 190
Target Start/End: Original strand, 47522288 - 47522413
Alignment:
Q  65 gagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaa 164  Q
    |||| |||| |||||||| ||||| |||||||||||||||| |||| | |||| || | |||||||||| |||||||| |||||||||| | |||| ||     
T  47522288 gagctaccgagagaatcccaggaagcagcagcaacatcaatctattggtctccattgccgtcgaaagagaaactgagagaatccgaggaggaagcagcag 47522387  T
Q  165 caacagcaatttcttcttctccatta 190  Q
    ||||  |||||||||  |||||||||    
T  47522388 caactacaatttctttgtctccatta 47522413  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 47527904 - 47528110
Alignment:
Q  18 aggaagcagtaacaagagcatttactttgtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcc 117  Q
    |||||||| ||  ||||||||||   |||||| ||||||||| ||| ||||||| | |||||| ||||||| |||||||||||| |||||||| |  |||    
T  47527904 aggaagcattagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcgaggaagcagcagcaacattaatttattcgtttcc 47528003  T
Q  118 tttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatcc 217  Q
     ||||||   |||||||||  |||| |||| || ||||||||| ||| ||   ||||||||   ||||||||||||  ||||  |||||| |  ||||||    
T  47528004 attacagataaaagagcaatggagagaatctgatgaagcagcatcaaaaa---caatttctctgtctccattacagccgaaaaagcaaccaaatgaatcc 47528100  T
Q  218 gaggaagcag 227  Q
    ||||||||||    
T  47528101 gaggaagcag 47528110  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 47527778 - 47527911
Alignment:
Q  24 cagtaacaagagcatttactttgtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttaca 123  Q
    ||||| |||||| |||| |||||||| |||| |||| ||  ||||||| | ||| ||| || ||| ||||||||||| |||||| || | |||| |||||    
T  47527778 cagtagcaagaggattttctttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaacaatttcttcgtctccattaca 47527877  T
Q  124 gtcgaaagagcaactgagaaaatccgaggaagca 157  Q
    || ||||||||||| |||| |||| |||||||||    
T  47527878 gttgaaagagcaaccgagagaatctgaggaagca 47527911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 310
Target Start/End: Original strand, 47527389 - 47527527
Alignment:
Q  172 aatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcga 271  Q
    ||||||||  ||||||| ||||| ||||  ||  || ||||||||||||||||| | |||||||||||||||||| |||| | ||||| |||  ||||||    
T  47527389 aatttctttgtctccatcacagtcgaaaaagcgtcctagagaatccgaggaagctggagctagagcattttctttttctcaactacagccgacggagcga 47527488  T
Q  272 ctgaaagaatccaaggaagaagcagcagcatcaatttat 310  Q
    | || | ||||  |||||  ||||||| |||||||||||    
T  47527489 cagagaaaatctgaggaaacagcagcaacatcaatttat 47527527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 306
Target Start/End: Original strand, 47522227 - 47522328
Alignment:
Q  205 accgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagcatca 304  Q
    |||||||||||| |||||| ||| ||| | | || ||| || |||||| ||||| |||||||||| || || ||||||| |||||| ||||||| |||||    
T  47522227 accgagagaatctgaggaaacagcagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatca 47522326  T
Q  305 at 306  Q
    ||    
T  47522327 at 47522328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 47522127 - 47522266
Alignment:
Q  171 caatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcg 270  Q
    ||||||||||  ||||| |||||||||||  |  | ||||||||||||||||| ||| ||  | | || ||||| |||||||||| ||||||||| || |    
T  47522127 caatttcttcgcctccactacagttgaaaaagagatcgagagaatccgaggaaacagaaggaacaacaatttctctgtctccattgcagtcgaaaaagag 47522226  T
Q  271 actgaaagaatccaaggaagaagcagcagcatcaatttat 310  Q
    || || ||||||  |||||  |||||||  ||||||||||    
T  47522227 accgagagaatctgaggaaacagcagcaatatcaatttat 47522266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 47549704 - 47549782
Alignment:
Q  119 ttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaa---caacagcaatttcttcttctccattacagt 194  Q
    |||||||| ||| ||| || |||| |||||||||||| | ||||||   ||||| |||||||||| |||||||||||||    
T  47549704 ttacagtcaaaaaagcgacagagagaatccgaggaaggaacaacaataacaacaacaatttcttcatctccattacagt 47549782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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