View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_26 (Length: 299)
Name: NF18491_low_26
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 5037582 - 5037862
Alignment:
| Q |
18 |
agaattagctttattcactaaaaaagaacaaggaataattagnnnnnnnnncccacatgttgtgtgccaaaccagatcaatttatgtttatatttttgca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5037582 |
agaattagctttattcactaaaaaagaacaaggaataattagttttttttgcct-catgttgtgtgccaaaccagatcaatttatgtttatatttttgca |
5037680 |
T |
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| Q |
118 |
catttgttttaatttgcttcacgacaaattgatttttcaaaaagccataatgttgcagcttatatttagaaataaaagatacctgcacatatcaatcagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5037681 |
catttgttttaatttgcttcacgacaaattgatttttcaaaaagccataatgttgcagcttatatttagagataaaagatacctgcacatatcaatcagt |
5037780 |
T |
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| Q |
218 |
cgtgaaatcaattgacattactagacctttttgtaatgaatactcaaaaacacatgtatggtatggtacaaataattttgat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5037781 |
cgtgaaatcaattgacattactagacctttttgtaacgaatactcaaaaacacatgtatggtatggtacaaataattttgat |
5037862 |
T |
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