View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18491_low_29 (Length: 282)
Name: NF18491_low_29
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 39296791 - 39297056
Alignment:
| Q |
1 |
tctagaagtcgcattaaatctaggttattctaaattgagtcaaaaagggaaattgagactacagaaattaacattaaaaattatttattttgcttgtttt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39296791 |
tctagaagtcgtattaaatctaggttattctaaattgagtcaaaaagggaaattgagactatagaaattaacattaaaaattatttattttgcttgtttt |
39296890 |
T |
|
| Q |
101 |
gaaagaaaatctatttcaacagaaattttacttcaattttacattgactaatgctattcnnnnnnnncttgaaaggatgactaatgctatcttagttacc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39296891 |
gaaagaaaatctatttcaaaagaaattttacttcaattttacattgactaatgctattcttttttttcttgaaaggatgactaatgctatcttagttacc |
39296990 |
T |
|
| Q |
201 |
aattagaggttatgtcgacgggttaagtaacaatgacttcatggccgttttacaaagagatttaag |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
39296991 |
aattagaggttatgtcgacgggttaagtaacaatgacttcatgcccgttttgcaaagagatttaag |
39297056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 39303102 - 39303249
Alignment:
| Q |
63 |
agaaattaacattaaaaattatttattttgcttgttttgaaagaaaatctatttcaacagaaattttacttcaattttacattgactaatgctattcnnn |
162 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||| || |
|
|
| T |
39303102 |
agaaattaacaataaaaattatttattttacttgttttgaaagaaaatctatttcaaaagaaaatttactgcaattttacattgactaattcta-tcttt |
39303200 |
T |
|
| Q |
163 |
nnnnncttgaaaggatgactaatgctatcttagttaccaattagaggtt |
211 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
39303201 |
tttttcttgaaaggatgactaatattaccttagttaccaattagaggtt |
39303249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39303069 - 39303102
Alignment:
| Q |
1 |
tctagaagtcgcattaaatctaggttattctaaa |
34 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
39303069 |
tctagaagtcgcattaaatctaggttattataaa |
39303102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University