View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18491_low_3 (Length: 747)

Name: NF18491_low_3
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18491_low_3
NF18491_low_3
[»] chr6 (16 HSPs)
chr6 (318-731)||(23257986-23258399)
chr6 (332-731)||(23247598-23247995)
chr6 (332-731)||(23252010-23252407)
chr6 (460-731)||(23266541-23266812)
chr6 (16-192)||(23258522-23258699)
chr6 (601-731)||(23283659-23283789)
chr6 (568-733)||(23587126-23587291)
chr6 (571-731)||(23289972-23290132)
chr6 (585-733)||(23583242-23583390)
chr6 (589-731)||(23634162-23634304)
chr6 (586-733)||(23391439-23391586)
chr6 (589-731)||(23506982-23507124)
chr6 (320-427)||(23266804-23266911)
chr6 (571-730)||(23594195-23594354)
chr6 (254-297)||(23258418-23258461)
chr6 (254-294)||(23266934-23266974)


Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 318 - 731
Target Start/End: Complemental strand, 23258399 - 23257986
Alignment:
Q  318 ttacaaatactctacctgttaccttatcctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaact 417  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258399 ttacaaatactctacctgttaccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaact 23258300  T
Q  418 ctctctccaattgccacttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258299 ctctctccaattgccacttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattc 23258200  T
Q  518 cctcaacagcatcttcttcgtatgacatgtcaactccgaatttggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaa 617  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258199 cctcaacagcatcttcttcgtatgacatgtcaactccgaattcggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaa 23258100  T
Q  618 ggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggcta 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23258099 ggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctg 23258000  T
Q  718 gggacttttccaac 731  Q
    ||||||||||||||    
T  23257999 gggacttttccaac 23257986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 332 - 731
Target Start/End: Complemental strand, 23247995 - 23247598
Alignment:
Q  332 cctgttaccttatcctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactctctctccaattgc 431  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||| |    
T  23247995 cctgttaccttattctttccttcaaacacaacaatgcttccctatatatataacacaccttactcttcattctcttaaaacaaa--ctctctccaattcc 23247898  T
Q  432 cacttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatct 531  Q
    |||||| ||||| ||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |||||| ||  | |    
T  23247897 cactttacctctcaaaaccattttccactctatccaacacatacatatgattagtactaacaactcttcctattcacactccatttcctcaaaagatttt 23247798  T
Q  532 tcttcgtatgacatgtcaactccgaatttggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacc 631  Q
    ||| | |  |||   ||| | |||  ||  ||||| || |||||  | |||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  23247797 tctcccttcgacgcatcatcaccgggttctgaggtgcggttagcatcaagtaacccgaagaagcgagcagggaggaagatatttaaggaaactcgccacc 23247698  T
Q  632 cgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaac 731  Q
    || | ||||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||||||  ||||||||||| || |||||||||||    
T  23247697 cggtctatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctgggaacttttccaac 23247598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 332 - 731
Target Start/End: Complemental strand, 23252407 - 23252010
Alignment:
Q  332 cctgttaccttatcctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactctctctccaattgc 431  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||| |    
T  23252407 cctgttgccttattctttccttcaaacacaactatgcttccctatatatataacacaccttactcttcattctcttaaaacaaa--ctctctccaattac 23252310  T
Q  432 cacttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatct 531  Q
    |||||| ||||| ||||| |||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||| |||||| |||||| ||  | |    
T  23252309 cactttacctctcaaaaccattttccactctatccaacacatacatatgataagtactaacaactcttcctattcacactccatttcctcaaaagatttt 23252210  T
Q  532 tcttcgtatgacatgtcaactccgaatttggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacc 631  Q
    ||| | |  |||   ||| | ||| |||  ||||| || |||||  | || ||||| |||||| |||| ||||||||||| || ||||||||||| ||||    
T  23252209 tctcccttcgacgcatcatcaccggattctgaggtgcggttagcatcaagcaacccgaagaagagagcggggaggaagatatttaaggaaactcgtcacc 23252110  T
Q  632 cgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaac 731  Q
    |  | ||||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||||||  |||||||||||||| |||||||||||    
T  23252109 ctgtctatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctaggaacttttccaac 23252010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 460 - 731
Target Start/End: Complemental strand, 23266812 - 23266541
Alignment:
Q  460 tctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatcttcttcgtatgacatgtcaactccgaatt 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||  |||||||||||| ||  | |  |||   ||| | |    
T  23266812 tctctccaacacatacatatgtttactactaacaactcttcctattcacactccatttcctcagaagcatcttcttcctactataactcattaccggaat 23266713  T
Q  560 tggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaa 659  Q
     |||| |||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  23266712 cggagatacgattagcagctagtaacccgaagaagagagcagggaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaa 23266613  T
Q  660 cttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaac 731  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||    
T  23266612 cttagataaatgggtttgtgaaatgagggaacccaacacgaagactagaatttggctaggaacttttccaac 23266541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 23258699 - 23258522
Alignment:
Q  16 gcgcaatcaataacatgtgggtttgaaagggatggagagccaaaaagagtaaattcctctgaatcatataataaccttgtatagtgacgcagcaatagat 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  23258699 gcgcaatcagtaacatgtgggtttgaaagggatggagagccaaaaatagtaaattcctctgaatcatataataaccttgtatagtgacgcagc-gtagat 23258601  T
Q  116 attttgataacatgcct--taaaataaaataaaatagaaagaggatattttaataaccttgttcattttgagccaagtg 192  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23258600 attttcataacatgccttataaaataaaataaaatagaaagaggatattttgataaccttgttcattttgagccaagtg 23258522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 601 - 731
Target Start/End: Complemental strand, 23283789 - 23283659
Alignment:
Q  601 gggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaa 700  Q
    ||||||||||  || ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  23283789 gggaggaagaagtttaaggagactcgccacccggtgtataggggtgtgaggaagaggaacttagataaatgggtttgtgaaatgagggaacccaacaaaa 23283690  T
Q  701 agaccaggatttggctagggacttttccaac 731  Q
    |||| ||||||||||||||||||||||||||    
T  23283689 agactaggatttggctagggacttttccaac 23283659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 568 - 733
Target Start/End: Complemental strand, 23587291 - 23587126
Alignment:
Q  568 cgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagata 667  Q
    ||||||||||| | || ||| |||||||| |||||||||||||  ||||||||||||||||||||  | |||||||| ||||||||||||||||||||||    
T  23587291 cgattagcggcaactaccccgaagaagcgtgcagggaggaagaagttcaaggaaactcgccacccagtctatagaggagtgaggaagaggaacttagata 23587192  T
Q  668 aatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaactg 733  Q
    ||||||| |||||||||||||| || ||||  ||||| | ||||||||||||||||||||||||||    
T  23587191 aatgggtttgtgaaatgagggagcctaacaagaagactaagatttggctagggacttttccaactg 23587126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 571 - 731
Target Start/End: Complemental strand, 23290132 - 23289972
Alignment:
Q  571 ttagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaat 670  Q
    |||||||| |||  |||||| || | ||||||||||||||  || ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23290132 ttagcggcgagttgcccaaaaaaaccagcagggaggaagaagtttaaggagactcgccacccggtgtatagaggtgtgaggaagaggaacttagataaat 23290033  T
Q  671 gggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaac 731  Q
    |||||||||||||||||||||| || |  ||||| ||||||||||||||||||||| ||||    
T  23290032 gggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaac 23289972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 585 - 733
Target Start/End: Complemental strand, 23583390 - 23583242
Alignment:
Q  585 cccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatg 684  Q
    |||||||||||| |||||||||||||  |||||||| |||||||||||| | ||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  23583390 cccaaagaagcgtgcagggaggaagaagttcaaggagactcgccacccggtctataggggtgtaaggaagaggaacttagataaatgggtttgtgaaatg 23583291  T
Q  685 agggaacccaacacaaagaccaggatttggctagggacttttccaactg 733  Q
    ||| | || ||||  ||||| | ||||||||||||||||||||||||||    
T  23583290 aggaagcctaacaagaagactaagatttggctagggacttttccaactg 23583242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 589 - 731
Target Start/End: Complemental strand, 23634304 - 23634162
Alignment:
Q  589 aagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgaggg 688  Q
    |||||||| |||||||||||||  |||||||| || ||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||||||||    
T  23634304 aagaagcgtgcagggaggaagaagttcaaggagacacgccacccggtgtacaggggtgtgaggaggaggaacttagataaatgggtgtgtgaaatgaggg 23634205  T
Q  689 aacccaacacaaagaccaggatttggctagggacttttccaac 731  Q
    | || ||||  ||||| | ||||||||||||||||||||||||    
T  23634204 agcctaacaagaagactaagatttggctagggacttttccaac 23634162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 586 - 733
Target Start/End: Complemental strand, 23391586 - 23391439
Alignment:
Q  586 ccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatga 685  Q
    ||||||||||| |||||||||||||  |||||||| |||||||||||| | ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  23391586 ccaaagaagcgtgcagggaggaagaagttcaaggagactcgccacccggtatataggggtgtgaggaaaagaaacttagataaatgggtgtgtgaaatga 23391487  T
Q  686 gggaacccaacacaaagaccaggatttggctagggacttttccaactg 733  Q
    ||||||| || |  ||||| |  ||||||||||| |||||||||||||    
T  23391486 gggaaccaaataagaagactaaaatttggctaggcacttttccaactg 23391439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 589 - 731
Target Start/End: Complemental strand, 23507124 - 23506982
Alignment:
Q  589 aagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgaggg 688  Q
    |||||||| | |||||||||||  ||||||||||||||||||||| ||||||| ||||||||||  |||||| |||||||||||||||||||||| ||      
T  23507124 aagaagcgtggagggaggaagaaattcaaggaaactcgccacccggtgtataggggtgtgaggagtaggaacctagataaatgggtgtgtgaaataagac 23507025  T
Q  689 aacccaacacaaagaccaggatttggctagggacttttccaac 731  Q
    | || |||| |||||||| |||||||||||| |||||||||||    
T  23507024 agcctaacaaaaagaccaagatttggctaggaacttttccaac 23506982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 320 - 427
Target Start/End: Complemental strand, 23266911 - 23266804
Alignment:
Q  320 acaaatactctacctgttaccttatcctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactct 419  Q
    ||||| ||||| ||||||||||||| ||||||||||||  ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |    
T  23266911 acaaacactctgcctgttaccttattctttccttcaaaaccaagtatgcttcactatatatgtaacacaccttactcttcattctcttaaaaacaactat 23266812  T
Q  420 ctctccaa 427  Q
    ||||||||    
T  23266811 ctctccaa 23266804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 571 - 730
Target Start/End: Complemental strand, 23594354 - 23594195
Alignment:
Q  571 ttagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaat 670  Q
    ||||| || |||| |||||||||||| ||| | || ||||  |||||||  ||| |||||||||| ||||| ||||||||||  ||||| |||| |||||    
T  23594354 ttagctgcaagtaccccaaagaagcgtgcatgcagaaagaagttcaaggtgacttgccacccgatctataggggtgtgaggagtaggaatttaggtaaat 23594255  T
Q  671 gggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaa 730  Q
    ||||||||||||||||||| || ||||  | ||| | ||| |||||||| ||||||||||    
T  23594254 gggtgtgtgaaatgagggagcctaacaagatgactaagatatggctaggaacttttccaa 23594195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 23258461 - 23258418
Alignment:
Q  254 ttgataaccaatcacaaagcctccaacttgggaaatagctcact 297  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  23258461 ttgataaccaatcacacagcctccaacttgggaaatagctcact 23258418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 23266974 - 23266934
Alignment:
Q  254 ttgataaccaatcacaaagcctccaacttgggaaatagctc 294  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  23266974 ttgataaccaatcacaaagcctccaacttaggaaatagctc 23266934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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