View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_30 (Length: 273)
Name: NF18491_low_30
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 32413881 - 32413669
Alignment:
| Q |
1 |
gtaaaaattttgtttctcatctctatgctgctctctcaaacttgggagttaacacttttcttgacgatgagaacttactaagggatactgaactcagaga |
100 |
Q |
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| T |
32413881 |
gtaaaaattttgtttctcatctcgatgctgctctctcaaacttgggagttaacacttttcttgatgatgagaacttactaagggatactgaactcagaga |
32413782 |
T |
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| Q |
101 |
aaaactaatgagcgcaataagaggacctcactcatatctctattgttatttacgagcttgaagaaatcatgaagccatgttgtttttcctttgttttacg |
200 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32413781 |
aaaactactgagcgcaataagaggatctcactcatatctctattgttatttacgagcttgaagaaatcatgaagccatgttgtttttccagtgttttacg |
32413682 |
T |
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| Q |
201 |
atgttgatccatc |
213 |
Q |
| |
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||||||||||||| |
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| T |
32413681 |
atgttgatccatc |
32413669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 6908815 - 6908757
Alignment:
| Q |
12 |
gtttctcatctctatgctgctctctcaaacttgggagttaacacttttcttgacgatga |
70 |
Q |
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| T |
6908815 |
gtttctcatctatatgctgctctctcaaacgcgggaatcaacacttttcttgatgatga |
6908757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 7788985 - 7788930
Alignment:
| Q |
12 |
gtttctcatctctatgctgctctctcaaacttgggagttaacacttttcttgacga |
67 |
Q |
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| T |
7788985 |
gtttctcatctatatgctgctctatcaagcatgggaatcaacacttttcttgacga |
7788930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 3309630 - 3309695
Alignment:
| Q |
6 |
aattttgtttctcatctctatgctgctctctcaaacttgggagttaacacttttcttgacgatgag |
71 |
Q |
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| T |
3309630 |
aattttgtttctcatctctatgccgcactcacaaatgttcgaattaacacttttcttgacgatgag |
3309695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 3288942 - 3288884
Alignment:
| Q |
186 |
ttcctttgttttacgatgttgatccatctgttgtgcgccatcagacgggtgcttttgga |
244 |
Q |
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| T |
3288942 |
ttcctgtgtttcatgatgttgatccgtccgttgtgcgccaccagaagggtgcttttgga |
3288884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 7167155 - 7167109
Alignment:
| Q |
194 |
ttttacgatgttgatccatctgttgtgcgccatcagacgggtgcttt |
240 |
Q |
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| T |
7167155 |
ttttacgacgttgatccatcagttgtgcgccaacagaagggtgcttt |
7167109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 3265067 - 3265038
Alignment:
| Q |
194 |
ttttacgatgttgatccatctgttgtgcgc |
223 |
Q |
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| T |
3265067 |
ttttacgatgttgatccatctgttgtgcgc |
3265038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 3395184 - 3395119
Alignment:
| Q |
8 |
ttttgtttctcatctctatgctgctctctcaaacttgggagttaacacttttcttgacgatgagaa |
73 |
Q |
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|||||||||||||||||||||||||||| || || ||| | || ||||||||||| |||||||| |
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| T |
3395184 |
ttttgtttctcatctctatgctgctctcacagacgctggaatcaatacttttcttgatgatgagaa |
3395119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 3410887 - 3410807
Alignment:
| Q |
176 |
catgttgtttttcctttgttttacgatgttgatccatctgttgtgcgccatcagacgggtgcttttggaaatgcgttggaa |
256 |
Q |
| |
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||||||||||| || ||||||| ||||||||||| |||||||| || ||||||| |||| |||||| || || |||||| |
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| T |
3410887 |
catgttgttttgccagtgttttatgatgttgatccttctgttgtacggcatcagaaaggtgattttggtaaagctttggaa |
3410807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 30414625 - 30414686
Alignment:
| Q |
12 |
gtttctcatctctatgctgctctctcaaacttgggagttaacacttttcttgacgatgagaa |
73 |
Q |
| |
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||||||||||| || ||||||||||||||| | || | ||||| ||||||||||||||||| |
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| T |
30414625 |
gtttctcatctgtacgctgctctctcaaacgcgcgaatcaacacatttcttgacgatgagaa |
30414686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 20835824 - 20835900
Alignment:
| Q |
10 |
ttgtttctcatctctatgctgctctctcaaacttgggagttaacacttttcttgacgatgagaa-cttactaaggga |
85 |
Q |
| |
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|||||||||||||||||||||| ||| ||||| ||||| ||||||||||||| ||| |||| ||||| |||||| |
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| T |
20835824 |
ttgtttctcatctctatgctgcactccaaaactcaggagtctacacttttcttgatgatcagaagcttacaaaggga |
20835900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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