View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_34 (Length: 264)
Name: NF18491_low_34
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 2101433 - 2101187
Alignment:
| Q |
18 |
attttcgatcagggtaactactagtactatttataggcagatattagaatcgttttagcaagaaaatatctcttattttccgtttttaatgcaaaagtaa |
117 |
Q |
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| T |
2101433 |
attttcgatcagggtaactactagtactatttataggcagatattagaatcgttttagcaagaaaatatgtcttattttccgtttttaatgcaaaagtaa |
2101334 |
T |
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| Q |
118 |
aatgaagagacttattgaagaagattgaaaagtaaactgccacggttacagatttattaccacaaactacagatttattacagtctacagtaaatcttat |
217 |
Q |
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| T |
2101333 |
aatgaagagacttatcgaagaagattgaaaagtaaactgccacggttacagatttattaccacaaactacagatttattacagtctacagtaaatcttat |
2101234 |
T |
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| Q |
218 |
ccgtttagatgct--ttttaagt-aaagaacctgtgtgataatgtgt |
261 |
Q |
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| T |
2101233 |
ccgtttagatgctttttttaagtaaaagaagttgtgtgataatgtgt |
2101187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 39185748 - 39185797
Alignment:
| Q |
18 |
attttcgatcagggtaactactagtactatttataggcagatattagaat |
67 |
Q |
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| T |
39185748 |
attttcgattagggtaagtactaatactatttataggcagatattagaat |
39185797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 39186777 - 39186841
Alignment:
| Q |
202 |
ctacagtaaatcttatccgtttagatgc-tttttaagt-aaagaacctgtgtgataatgtgtcat |
264 |
Q |
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| T |
39186777 |
ctacagtaaatcctatctgtttagattcttttttaagtaaaagaacttgtgtgatactgtgtcat |
39186841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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