View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18491_low_35 (Length: 262)
Name: NF18491_low_35
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 35310213 - 35309979
Alignment:
| Q |
12 |
acagaacatcaacaaattaagcaagtcatttctttttcttcatggtttggcattattgtattgtttcaccaaaatcaacgaatggttacatcaaatttga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35310213 |
acagaacatcaacaaattaagcaagtcatttctttttcttcatggtttggcattattgtattgtttcaccaaaatcaacgaatggttacatcaaatttga |
35310114 |
T |
|
| Q |
112 |
tatgtatgttgaagacaaagtcgacaaattctatccattgataaagattcatcataatataacaactatacggtcaattcctatttaaaattaccccact |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35310113 |
tatgtatgttgaagacaaagtcgacaaattctatccattgataaagattcatcataatataacaactatacggtcaattcctatttaaaattaccccact |
35310014 |
T |
|
| Q |
212 |
tgctagctactacaatcaatttcatagtttcattt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35310013 |
tgctagctactacaatcaatttcatagtttcattt |
35309979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University