View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_38 (Length: 250)
Name: NF18491_low_38
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38300013 - 38300253
Alignment:
| Q |
1 |
ataatgaatctgatagctgcagaatcgctacaaaattttcaaacataatgaaaataaaccctagcataaactgcaagattcctgcaaatacttattttat |
100 |
Q |
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| T |
38300013 |
ataatgaatctgatagctgcagaatcgctacaaaattttcaaacataatgaaaataaaccctagcataa-ctgcaagattcctgcaaatacttattttat |
38300111 |
T |
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| Q |
101 |
tgaaaaactagtattggaataatccaatcaagtagagaagctgactcaagaataatcctttttatgtatagttaggtatattgtcaacccatccatcttc |
200 |
Q |
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| T |
38300112 |
tgaaaaactagtattggaataatccaatcaagtagagaagctgactcaagaataatcctttttctgtatagtt-ggtatattgttaagccatctatcttc |
38300210 |
T |
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| Q |
201 |
atttatgaaagatgataaagaataatcatttatattcatttca |
243 |
Q |
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| T |
38300211 |
atttatgaaagatgataaagaataatcatttatatttatttca |
38300253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 38292442 - 38292542
Alignment:
| Q |
1 |
ataatgaatctgatagctgcagaatcgctacaaaattttcaaacataat-gaaaataaaccctagcataaactgcaagattcctgcaaatacttatttta |
99 |
Q |
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|||||||||||||||| |||||||| ||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||| || | |||||||||| |
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| T |
38292442 |
ataatgaatctgataggtgcagaattgctacaaaagtttgaaacataatcaaaaataaaccctagcat-aactgcaagattcctacatacacttatttta |
38292540 |
T |
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| Q |
100 |
tt |
101 |
Q |
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|| |
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| T |
38292541 |
tt |
38292542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 38304395 - 38304463
Alignment:
| Q |
175 |
ggtatattgtcaacccatccatcttcatttatgaaagatgataaagaataatcatttatattcatttca |
243 |
Q |
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| T |
38304395 |
ggtatattgttaagccatccatcttcatttatgaaagatgataaagaataatcatttatgtttatttca |
38304463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 38292588 - 38292671
Alignment:
| Q |
159 |
tttttatgtatagttaggtatattgtcaacccatccatcttcatttatgaaagatgataaagaataatcatttatattcatttca |
243 |
Q |
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| T |
38292588 |
tttttatgtataggt-ggtatgttggaaagccatctatcttcatttatgaaagatgataaagaataatcatttatatttatttca |
38292671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 18745561 - 18745508
Alignment:
| Q |
189 |
ccatccatcttcatttatgaaagatgataaagaataatcatttatattcatttc |
242 |
Q |
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| T |
18745561 |
ccatccatctttatttatgaaagatgataaagaatattcttgtatatttatttc |
18745508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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