View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_39 (Length: 249)
Name: NF18491_low_39
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1329135 - 1328923
Alignment:
| Q |
1 |
agacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacgtcataataaactnnnnnnntctaacagtatgaaagctttaaacttgg |
100 |
Q |
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| T |
1329135 |
agacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacgtcataataaactaaaaaaatctaacagtatgaaagctttaaacttgg |
1329036 |
T |
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| Q |
101 |
gatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaaaactcacctttaacacccatacc |
200 |
Q |
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| T |
1329035 |
gatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaagactcacctttaacacccatacc |
1328936 |
T |
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| Q |
201 |
ttcaattatttgg |
213 |
Q |
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||||||||||||| |
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| T |
1328935 |
ttcaattatttgg |
1328923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 44187717 - 44187587
Alignment:
| Q |
83 |
tgaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaaaactc |
182 |
Q |
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| T |
44187717 |
tgaaagctttaaacttggaatgcaagtacaactaattcttaattcagccaacaggaataagattttttttacaaattgccacctcacaacagaaaggctc |
44187618 |
T |
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| Q |
183 |
acctttaacacccataccttcaattatttgg |
213 |
Q |
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| T |
44187617 |
gcctttaacacccatatcttcaattgtttgg |
44187587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 44186353 - 44186279
Alignment:
| Q |
138 |
aagaagatttttcttataaattgcgacctcacaacagaaaaactcacctttaacacccataccttcaattatttg |
212 |
Q |
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| T |
44186353 |
aagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttg |
44186279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 6432874 - 6432798
Alignment:
| Q |
85 |
aaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgc |
161 |
Q |
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||||||||||||||| ||| |||| | |||||| || | |||| ||||||||||||| |||||| |||||||||| |
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| T |
6432874 |
aaagctttaaacttgagatgcaaaaataactaactcctctttcgaccaattggaagaaagtttttcctataaattgc |
6432798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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