View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_40 (Length: 243)
Name: NF18491_low_40
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1329220 - 1329445
Alignment:
| Q |
1 |
tctttattgaatgctcgcaattgcaagtctgtggaacttcaaaagaaaccagtaatttagaatctgctgcatgataaagtggcagtgaactcaattgtaa |
100 |
Q |
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| T |
1329220 |
tctttattgaatgctcgcaattgcaagtctgtggaacttcaaaagaaaccagtaatttagaatctgctgcatgataaagtggcagtgaactcaattgtaa |
1329319 |
T |
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| Q |
101 |
tatttttgttatgcttttgatattaatctcttgtttctggttttgcgccatgccacattgtcctgattcagctgtcaaggtttagacactgctctcgagt |
200 |
Q |
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| T |
1329320 |
tatttttgttatgcttttgatattaatctcttgtttctggttttgtgccatgccacattgtcctgattcagctgtcaaggtttagacactgctctcgagt |
1329419 |
T |
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| Q |
201 |
ttgtatgattttgatcaacaagcaag |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1329420 |
ttgtatgattttgatcaacaagcaag |
1329445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 44188073 - 44188188
Alignment:
| Q |
68 |
tgcatgataaagtggcagtgaactcaattgtaatatttttgttatgcttttgatattaatctcttgtttctggttttgcgccatgccacattgtcctgat |
167 |
Q |
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||||||||||| ||||||||||||| ||| ||||||||||| ||||||||| | |||||||||||||||||||||| || ||| |||| |||||| | |
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| T |
44188073 |
tgcatgataaaagggcagtgaactcagctgtgatatttttgttctgcttttgacactaatctcttgtttctggttttgtaccttgcaacatcgtcctggt |
44188172 |
T |
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| Q |
168 |
tcagctgtcaaggttt |
183 |
Q |
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| T |
44188173 |
tcagccgtcaaggttt |
44188188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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