View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18491_low_41 (Length: 241)
Name: NF18491_low_41
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_41 |
 | |
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| [»] scaffold0557 (2 HSPs) |
| | |
|
| [»] scaffold0442 (2 HSPs) |
| | |
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| [»] scaffold0115 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21005963 - 21006184
Alignment:
| Q |
1 |
agtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21005963 |
agtactatgattccaaatcacaatgtcaatcaaaacatgcagcgtcaaatctatcctgaaagtgttcaacaaaacaagaacaccatcatgagtactatgg |
21006062 |
T |
|
| Q |
101 |
ttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttcattgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006063 |
ttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttcattgat |
21006162 |
T |
|
| Q |
201 |
gagtacttcaataccagttatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21006163 |
gagtacttcaataccagttatg |
21006184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20903247 - 20903468
Alignment:
| Q |
1 |
agtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatgg |
100 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||| |||||| | ||||||||| | | |||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
20903247 |
agtactatgattccaaatcagggtgttaatcaaagcatgcaacatcaaatctacaccggaagtgttcaacagaacaagaacaccatcatgagtactatgg |
20903346 |
T |
|
| Q |
101 |
ttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttcattgat |
200 |
Q |
| |
|
||||||||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||||| || |||| |
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|
| T |
20903347 |
ttccaactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaatactacaatgat |
20903446 |
T |
|
| Q |
201 |
gagtacttcaataccagttatg |
222 |
Q |
| |
|
||||||| |||| ||||||||| |
|
|
| T |
20903447 |
gagtactccaatgccagttatg |
20903468 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20921853 - 20922068
Alignment:
| Q |
1 |
agtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatgg |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||| |||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
20921853 |
agtactatgattccaaatcacggtatcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgg |
20921952 |
T |
|
| Q |
101 |
ttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttcattgat |
200 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||| || ||||||||||||||||||||| |||||| ||| |||| |||||||||||| ||| |||| |
|
|
| T |
20921953 |
ttccaactcctagtgt------aaacttgcatcctcaggtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacctcaatgat |
20922046 |
T |
|
| Q |
201 |
gagtacttcaataccagttatg |
222 |
Q |
| |
|
||||| |||||| ||||||||| |
|
|
| T |
20922047 |
gagtaattcaatgccagttatg |
20922068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 21005850 - 21005900
Alignment:
| Q |
32 |
aaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaaca |
82 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
21005850 |
aaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca |
21005900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41336405 - 41336626
Alignment:
| Q |
1 |
agtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatgg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| |||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41336405 |
agtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgg |
41336504 |
T |
|
| Q |
101 |
ttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttcattgat |
200 |
Q |
| |
|
||||||||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||| ||| |||| |
|
|
| T |
41336505 |
ttccaactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaatacctcaatgat |
41336604 |
T |
|
| Q |
201 |
gagtacttcaataccagttatg |
222 |
Q |
| |
|
||||| |||||| ||||||||| |
|
|
| T |
41336605 |
gagtaattcaatgccagttatg |
41336626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5966 - 5739
Alignment:
| Q |
1 |
agtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatgg |
100 |
Q |
| |
|
|||||||||||||||||| || ||| ||| ||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5966 |
agtactatgattccaaattacggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaaaacaagaacaccatcatgagtactatgg |
5867 |
T |
|
| Q |
101 |
ttccaactcctagtgttaattctaacatg------caacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttc |
194 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||| ||||||||||||||| ||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
5866 |
ttccaactcctagtgttaatcaaaacatgcacattcagtttcaagtctacacttcaagtgttaatcaacaacagaagagcaacaccatgatgaatacttc |
5767 |
T |
|
| Q |
195 |
attgatgagtacttcaataccagttatg |
222 |
Q |
| |
|
| ||||||||||| ||| | ||||||| |
|
|
| T |
5766 |
aacgatgagtactttaatgcaagttatg |
5739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 5088 - 5311
Alignment:
| Q |
3 |
tactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatggtt |
102 |
Q |
| |
|
||||||||||| |||||||| ||| ||| ||| |||| ||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5088 |
tactatgattctaaatcacagtgttaattaaagcatgtagcgtcaaatctaccctagaagtgttcaacaaaacaagaacaccatcgtgagtactatggtt |
5187 |
T |
|
| Q |
103 |
ccaactcctagtgttaattctaacatgca------acctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttcat |
196 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||||||| ||||||||||||||| ||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
5188 |
ccaactccaagtgttaatgaaaacatgcacgtgctgtctcaagtctacacttcaagtgttaatcaacaacagaagagcaacaccatgatgaatacttcaa |
5287 |
T |
|
| Q |
197 |
tgatgagtacttcaataccagtta |
220 |
Q |
| |
|
|||||||| ||| ||| ||||||| |
|
|
| T |
5288 |
tgatgagtgctttaatgccagtta |
5311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 9360 - 9160
Alignment:
| Q |
1 |
agtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatgg |
100 |
Q |
| |
|
|||||||||||||||||| || ||| ||| ||| |||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9360 |
agtactatgattccaaattacggtgttaatcaaagcatgcaacttcaaatctaccctggaagtgttcaacaaaacaagaacaccatcatgagtactatgg |
9261 |
T |
|
| Q |
101 |
ttccaactcctagtgttaattcta------acatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttc |
194 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
9260 |
ttccaactcctagtgttaatcaaaacatgcacatgcagtttcaagtctacacttcaagtgttaatcaagaacagaagagcaacaccatgatgaatacttc |
9161 |
T |
|
| Q |
195 |
a |
195 |
Q |
| |
|
| |
|
|
| T |
9160 |
a |
9160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 8453 - 8660
Alignment:
| Q |
3 |
tactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatggtt |
102 |
Q |
| |
|
||||||||||| ||||||| ||| ||| ||| |||||| ||||||||| | || ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8453 |
tactatgattctaaatcacggtgttaattaaagcatgcaacgtcaaatcaaccctagaagtgttcaacaaaacaagaacaccattgtgagtactatggtt |
8552 |
T |
|
| Q |
103 |
ccaactcctagtgttaattcta------acatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttcat |
196 |
Q |
| |
|
| |||||||||||| ||| | ||||||| ||||||| ||||| ||||||||| ||||| |||| | |||||| | |||||||||||||||| |
|
|
| T |
8553 |
caaactcctagtgtaaatcaaaacatgcacatgcagtctcaagtctacacctcaagtgttaatcaacaacaaaagagcaaaaccatgatgaatacttcaa |
8652 |
T |
|
| Q |
197 |
tgatgagt |
204 |
Q |
| |
|
||||||| |
|
|
| T |
8653 |
cgatgagt |
8660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 46939 - 47166
Alignment:
| Q |
1 |
agtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatgg |
100 |
Q |
| |
|
||||| ||||||||||||||| ||| ||| ||| |||||| ||||||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
46939 |
agtaccatgattccaaatcacggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaatacaagaacatcatcgtgagtactatgg |
47038 |
T |
|
| Q |
101 |
ttccaactcctagtgttaattcta------acatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttc |
194 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||| |||||||||||| || ||||| |||||| || |||| ||||||||||||||| |
|
|
| T |
47039 |
ttccaactcctagtgttaatcaaaacatgcacatgcagtctcaagtctacacttcaagttttaatcaacaacagaacagtaacaccatgatgaatacttc |
47138 |
T |
|
| Q |
195 |
attgatgagtacttcaataccagttatg |
222 |
Q |
| |
|
| ||||||||||| ||| ||||||||| |
|
|
| T |
47139 |
aacgatgagtactttaatgccagttatg |
47166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 48039 - 47851
Alignment:
| Q |
43 |
cgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatggttccaactcctagtgttaattctaacat---------gcaac |
133 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
48039 |
cgtcaaatctagcttgtaagtgttcaacaaaacaagaacaccatcgtgagtattatggttccaactcctagtgttaatcaaaacatgcacatgcagcagt |
47940 |
T |
|
| Q |
134 |
ctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttcattgatgagtacttcaataccagttatg |
222 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| |||||| |||||||| |||||||||||||||| ||||| ||||| ||| ||||||||| |
|
|
| T |
47939 |
ctcaagtctacgcttcaagtgttaatcaacaacagaagagcaacaccatgatgaatacttcaacgatgattactttaatgccagttatg |
47851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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