View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_45 (Length: 238)
Name: NF18491_low_45
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 24315503 - 24315719
Alignment:
| Q |
17 |
catacacacctatgaagcacggacacatacacagatactagacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatag |
116 |
Q |
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| T |
24315503 |
catacacacctatgaagcacagacacagataaagatattagacacgacacgtatccgacactaggacacaatta-tccgaggattgtttgtgtttcatag |
24315601 |
T |
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| Q |
117 |
atactcatta------------ttatatatcatatatattgtgctatgaaatagacacacacatagaagcatggtaacacactacaataatacacttaaa |
204 |
Q |
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| T |
24315602 |
atactcattattattattattattatatatcatatatattgtgatatgaaatagacacgcacatagaagcatggtaacacactacaataataaacttaaa |
24315701 |
T |
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| Q |
205 |
tcccaaaagaacagacat |
222 |
Q |
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| T |
24315702 |
tcccaaaagaacagacat |
24315719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 19482739 - 19482798
Alignment:
| Q |
57 |
gacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatag |
116 |
Q |
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| T |
19482739 |
gacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag |
19482798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 22234878 - 22234819
Alignment:
| Q |
57 |
gacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatag |
116 |
Q |
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| T |
22234878 |
gacacgacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcatag |
22234819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 3947760 - 3947714
Alignment:
| Q |
57 |
gacacgacacgtatccgacactaggacacaattaatccgaggagtgt |
103 |
Q |
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| T |
3947760 |
gacacgacacgtgtccgacaccaggacacacctaatccgaggagtgt |
3947714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 29205528 - 29205590
Alignment:
| Q |
57 |
gacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatagata |
119 |
Q |
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| T |
29205528 |
gacacgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatagata |
29205590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 30606062 - 30606011
Alignment:
| Q |
68 |
tatccgacactaggacacaattaatccgaggagtgtttgtgtttcatagata |
119 |
Q |
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| T |
30606062 |
tatccgacaccaggacacacataatccgaggagtatttgtgttttatagata |
30606011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 27093414 - 27093366
Alignment:
| Q |
55 |
tagacacgacacgtatccgacactaggacacaattaatccgaggagtgt |
103 |
Q |
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| T |
27093414 |
tagacacgacatgtgtccgacactaggacacacctaatccgatgagtgt |
27093366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 27184887 - 27184935
Alignment:
| Q |
55 |
tagacacgacacgtatccgacactaggacacaattaatccgaggagtgt |
103 |
Q |
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| T |
27184887 |
tagacacgacatgtgtccgacactaggacacacctaatccgatgagtgt |
27184935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 4013179 - 4013134
Alignment:
| Q |
21 |
cacacctatgaagcacggacacatacacagatactagacacgacac |
66 |
Q |
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| T |
4013179 |
cacacctatgaagcattgacacatacacgggtactagacacgacac |
4013134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 26769582 - 26769643
Alignment:
| Q |
57 |
gacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatagat |
118 |
Q |
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| T |
26769582 |
gacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagat |
26769643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 1926057 - 1926117
Alignment:
| Q |
56 |
agacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatag |
116 |
Q |
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|||||||| ||||||||||||| |||||| ||||| ||||||| |||||||||||||| |
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| T |
1926057 |
agacacgatacgtatccgacaccgagacacacttaatatgaggagtatttgtgtttcatag |
1926117 |
T |
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