View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_50 (Length: 229)
Name: NF18491_low_50
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 7286827 - 7287045
Alignment:
| Q |
1 |
ttttagggaccattccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttttgtgaaatattatttttaacttca |
100 |
Q |
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| T |
7286827 |
ttttagggaccattccaatgtgtaataatgttacacattagggattataattgtggtttactctttgttaattttttgtgaaatattatttttaacttca |
7286926 |
T |
|
| Q |
101 |
catggtgtcatgatagcttcttggttttggttaaactctagcctagttaaattgtttgttccattgaactggttgccaacaaaagggcttccttggattg |
200 |
Q |
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| T |
7286927 |
catggtgtcctgatagcttcttggttttggttaaactccagcctagttaaatagtttgttcaattgaagtggttgccaacaaaagggcttccttgggttg |
7287026 |
T |
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| Q |
201 |
ttcttttgtaagttctctg |
219 |
Q |
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| T |
7287027 |
ttcttttgtaagttctctg |
7287045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 8357362 - 8357227
Alignment:
| Q |
11 |
cattccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttttgtgaaatattatttttaacttcacatggtgtca |
110 |
Q |
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| T |
8357362 |
cattccaatgtgaaatcaagttacactttagggactataattgtggtttgctctttgttaa-ttttcatg--acattatttttaactccctctggtgtac |
8357266 |
T |
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| Q |
111 |
tgatagcttcttggttttggttaaactctagcctagttaa |
150 |
Q |
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| T |
8357265 |
tcatagcttcttggatttggttaaact-tagcctagttaa |
8357227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 8365794 - 8365653
Alignment:
| Q |
5 |
agggaccattccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttttgtgaaatattatttttaacttcacatg |
104 |
Q |
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| T |
8365794 |
agggaccattccaatgtgaaatcaagttacactttcgggactataatcgtggtttgctctttcttaatttt---tacgacattatttttaactccacctg |
8365698 |
T |
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| Q |
105 |
gtgtcatgatagcttcttggttttggttaaactctagcctagttaa |
150 |
Q |
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| T |
8365697 |
gtgtactcgtagcttcttggaattggttaaactc-agcctagttaa |
8365653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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