View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18491_low_51 (Length: 227)

Name: NF18491_low_51
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18491_low_51
NF18491_low_51
[»] chr1 (17 HSPs)
chr1 (1-217)||(13244271-13244487)
chr1 (1-216)||(13271812-13272027)
chr1 (1-201)||(13080631-13080831)
chr1 (1-216)||(13086333-13086548)
chr1 (1-216)||(19278919-19279134)
chr1 (81-201)||(12963677-12963797)
chr1 (67-189)||(13007489-13007611)
chr1 (67-172)||(13204748-13204853)
chr1 (85-189)||(30367889-30367993)
chr1 (67-189)||(13069957-13070079)
chr1 (67-189)||(13101289-13101411)
chr1 (68-189)||(19727443-19727564)
chr1 (82-186)||(13064997-13065101)
chr1 (71-186)||(13161814-13161929)
chr1 (72-186)||(13130122-13130236)
chr1 (71-186)||(13094692-13094807)
chr1 (91-189)||(13214132-13214230)
[»] chr6 (1 HSPs)
chr6 (66-189)||(31396456-31396580)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 13244487 - 13244271
Alignment:
Q  1 ttcacatatggctccatgaaggtaaacaagcttatcaatcttttccacgtttaaattatcgatcaaattctcctcttgtgttagacaattatctttgatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  13244487 ttcacatatggctccatgaaggtaaacaagcttatcaatcttttccacgtttaaattattgattaaattctcctcttgtgttagacaattatctttgatc 13244388  T
Q  101 tcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagat 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244387 tcttgaataattttcgcttccccaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagat 13244288  T
Q  201 ttaccgcagtgtctctg 217  Q
    |||||||||||||||||    
T  13244287 ttaccgcagtgtctctg 13244271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13271812 - 13272027
Alignment:
Q  1 ttcacatatggctccatgaaggtaaacaagcttatcaatcttttccacgtttaaattatcgatcaaattctcctcttgtgttagacaattatctttgatc 100  Q
    ||||||||| ||| ||||||||||||  ||||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  13271812 ttcacatatagctgcatgaaggtaaatcagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaatgatctttgatc 13271911  T
Q  101 tcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagat 200  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||     
T  13271912 tcttgaataagttttgcttccacattaggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccatttcctgcagccaagagag 13272011  T
Q  201 ttaccgcagtgtctct 216  Q
    | |  |||||||||||    
T  13272012 tgaatgcagtgtctct 13272027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 13080831 - 13080631
Alignment:
Q  1 ttcacatatggctccatgaaggtaaacaagcttatcaatcttttccacgtttaaattatcgatcaaattctcctcttgtgttagacaattatctttgatc 100  Q
    ||||||||||||||||||||||||||| |||||||||| || ||||||   ||||||| |||| |||||||| || ||| ||| ||||||||||||||||    
T  13080831 ttcacatatggctccatgaaggtaaactagcttatcaagctcttccacacctaaattagcgataaaattctcatcgtgttttaaacaattatctttgatc 13080732  T
Q  101 tcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagat 200  Q
    ||||||||||||||  | || ||  ||||||| |||||||| |||||||| |||||| | ||||||| |||||||||||||||||||||| | |||||||    
T  13080731 tcttgaataattttaccatctaccctaggatgcgttgaaaccagccaaaaaaaccaagtgagacctgtactaattgttccatttcctgcaaccaagagat 13080632  T
Q  201 t 201  Q
    |    
T  13080631 t 13080631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13086333 - 13086548
Alignment:
Q  1 ttcacatatggctccatgaaggtaaacaagcttatcaatcttttccacgtttaaattatcgatcaaattctcctcttgtgttagacaattatctttgatc 100  Q
    ||||||||| |||||||||||||| || || |||| || |||||| ||  ||||||||  || |||||| ||||| |||| ||||||||||||||| |||    
T  13086333 ttcacatatagctccatgaaggtacactagtttattaagcttttcaactcttaaattagtgaccaaattatcctcatgtgatagacaattatcttttatc 13086432  T
Q  101 tcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagat 200  Q
    |||||||| ||||| |||||||| ||   ||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| | |||||||    
T  13086433 tcttgaattattttagcttccactatgaaatgagttgaaacaagccaagagaaccaacttagacctgaactaactgttccacttcctgcagctaagagat 13086532  T
Q  201 ttaccgcagtgtctct 216  Q
    | |  |||||||||||    
T  13086533 tgaatgcagtgtctct 13086548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 19279134 - 19278919
Alignment:
Q  1 ttcacatatggctccatgaaggtaaacaagcttatcaatcttttccacgtttaaattatcgatcaaattctcctcttgtgttagacaattatctttgatc 100  Q
    ||||||||| ||||||||||| ||||| |||||||||| || || |||  | |||||   ||||||||| ||||||| ||||| ||| ||| | ||||||    
T  19279134 ttcacatatagctccatgaagataaactagcttatcaagctctttcacactaaaatttgtgatcaaattatcctcttttgttaaacagttaaccttgatc 19279035  T
Q  101 tcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagat 200  Q
    |||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||| | ||||| ||||||||||||||||| |||||| | |||||||    
T  19279034 tcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagat 19278935  T
Q  201 ttaccgcagtgtctct 216  Q
    | |  |||||||||||    
T  19278934 tgagagcagtgtctct 19278919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 81 - 201
Target Start/End: Complemental strand, 12963797 - 12963677
Alignment:
Q  81 ttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttcc 180  Q
    ||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12963797 ttagaaaattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttcc 12963698  T
Q  181 atttcctgcaccgaagagatt 201  Q
    | |||||||| | ||||||||    
T  12963697 acttcctgcagctaagagatt 12963677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 13007489 - 13007611
Alignment:
Q  67 attctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 166  Q
    |||||||||||||||  | || ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  13007489 attctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacct 13007588  T
Q  167 gaactaattgttccatttcctgc 189  Q
    ||||||||||| |||||||||||    
T  13007589 gaactaattgtgccatttcctgc 13007611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 13204748 - 13204853
Alignment:
Q  67 attctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 166  Q
    |||||||||||||||  |||| ||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  13204748 attctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccaaaaaaaccaacttagacct 13204847  T
Q  167 gaacta 172  Q
    ||||||    
T  13204848 gaacta 13204853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 30367993 - 30367889
Alignment:
Q  85 acaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccattt 184  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||| |||||||| ||| |||||     
T  30367993 acaattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaactaagtgtgccatta 30367894  T
Q  185 cctgc 189  Q
    |||||    
T  30367893 cctgc 30367889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 13070079 - 13069957
Alignment:
Q  67 attctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 166  Q
    |||||||||||||||  | || |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  13070079 attctcctcttgtgtgggccagttatcttttatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacct 13069980  T
Q  167 gaactaattgttccatttcctgc 189  Q
    ||| ||| ||| |||||||||||    
T  13069979 gaagtaactgtgccatttcctgc 13069957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 13101289 - 13101411
Alignment:
Q  67 attctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 166  Q
    |||||||||||||||  |||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||| ||| ||    
T  13101289 attctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccagaaaaaccaactgagagct 13101388  T
Q  167 gaactaattgttccatttcctgc 189  Q
    ||||||| ||  |||||||||||    
T  13101389 gaactaactgggccatttcctgc 13101411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 19727443 - 19727564
Alignment:
Q  68 ttctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctg 167  Q
    ||||||||||||||  | || ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||    
T  19727443 ttctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaaaaaccaactgagacctg 19727542  T
Q  168 aactaattgttccatttcctgc 189  Q
     ||||| ||  |||||||||||    
T  19727543 tactaactgggccatttcctgc 19727564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 13065101 - 13064997
Alignment:
Q  82 tagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttcca 181  Q
    ||||||||||||||| |||||||||||||| || |||||||||| |||||||  |||||||||||||||||||||||| ||||||||||||| ||| ||     
T  13065101 tagacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccg 13065002  T
Q  182 tttcc 186  Q
    |||||    
T  13065001 tttcc 13064997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 13161814 - 13161929
Alignment:
Q  71 tcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 170  Q
    |||||||||||||| ||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||  ||||| || |||||||| ||| ||||||    
T  13161814 tcctcttgtgttagccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaac 13161913  T
Q  171 taattgttccatttcc 186  Q
    ||||||  ||||||||    
T  13161914 taattgaaccatttcc 13161929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 13130122 - 13130236
Alignment:
Q  72 cctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaact 171  Q
    ||||||||||||  ||||||||||||||||||||||| |||||  ||||||||||||||| |||||||| |||||| || |||||||| ||| |||||||    
T  13130122 cctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaact 13130221  T
Q  172 aattgttccatttcc 186  Q
    |||||  ||||||||    
T  13130222 aattgaaccatttcc 13130236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 13094692 - 13094807
Alignment:
Q  71 tcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 170  Q
    |||||| ||||||  ||||||||| ||||||||||||| |||||  ||||||||||||||| |||||||| |||||| || |||||||| ||| ||||||    
T  13094692 tcctctcgtgttaaccaattatctctgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaac 13094791  T
Q  171 taattgttccatttcc 186  Q
    ||||||| ||||||||    
T  13094792 taattgtaccatttcc 13094807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 13214132 - 13214230
Alignment:
Q  91 atctttgatctcttgaataattttcgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgc 189  Q
    |||||| || |||||||||||||| |||||||||||| ||||||||||||||||||| || |||||| | |||||||||| || ||  |||||||||||    
T  13214132 atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgc 13214230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 31396580 - 31396456
Alignment:
Q  66 aattctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccacaataggatgagttg-aaacaagccaaaagaaccaacttagac 164  Q
    ||||||| | ||| ||| |||| |||||||  ||||||||||||||||| ||||||||| |||||||||||| |||||||||| || |||||||  ||||    
T  31396580 aattctcatgttgggtttgacagttatcttgaatctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagac 31396481  T
Q  165 ctgaactaattgttccatttcctgc 189  Q
     |||||||||||| |||||||||||    
T  31396480 ttgaactaattgtgccatttcctgc 31396456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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