View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18491_low_7 (Length: 519)

Name: NF18491_low_7
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18491_low_7
NF18491_low_7
[»] chr1 (5 HSPs)
chr1 (1-359)||(13858237-13858595)
chr1 (400-500)||(13858634-13858734)
chr1 (41-139)||(29902525-29902623)
chr1 (231-295)||(29902724-29902788)
chr1 (232-298)||(35831967-35832033)
[»] chr2 (3 HSPs)
chr2 (1-105)||(27954273-27954377)
chr2 (2-139)||(26465432-26465569)
chr2 (231-295)||(26465279-26465343)
[»] chr7 (3 HSPs)
chr7 (8-139)||(39806400-39806531)
chr7 (232-297)||(39806253-39806318)
chr7 (237-297)||(47693811-47693871)
[»] chr4 (1 HSPs)
chr4 (14-48)||(52154385-52154419)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 13858237 - 13858595
Alignment:
Q  1 ataaaagcaatgataatttctctcaggatcagaaacttgacaaacacgtgatcgttccagcaaataagttctgatagcagctcctgatattctccccttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13858237 ataaaagcaatgataatttctctcaggatcagaaacttgacaaacacgtgatcgttccagcaaataagttctgatagcagctcctgatattctccccttt 13858336  T
Q  101 tgatcgaactgaatctccacaaacttaccaaaacgactgaaattatatactatgtaagattaggacagactttaaaacaattaagagaaacaagtgtatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13858337 tgatcgaactgaatctccacaaacttaccaaaacgactgaaattatatactatgtaagattaggacagactttaaaacaattaagagaaacaagtgtatg 13858436  T
Q  201 gtagagattacaaagattataaaaaatgaataccttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactgcataa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13858437 gtagagattacaaagattataaaaaatgaataccttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactgcataa 13858536  T
Q  301 gtgcatatgattagcatagtgagtaataataacatctgaaattattatcggtgtttaca 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13858537 gtgcatatgattagcatagtgagtaataataacatctgaaattattatcggtgtttaca 13858595  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 400 - 500
Target Start/End: Original strand, 13858634 - 13858734
Alignment:
Q  400 ctttatagacatttggctttcttacctcaagaacttgttgctccacagaccgtccctcagttgctgctcttcctcccaaataggcaaggtaatgcataag 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13858634 ctttatagacatttggctttcttacctcaagaacttgttgctccacagaccgtccctcagttgctgctcttcctcccaaataggcaaggtaatgcataag 13858733  T
Q  500 c 500  Q
    |    
T  13858734 c 13858734  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 29902525 - 29902623
Alignment:
Q  41 caaacacgtgatcgttccagcaaataagttctgatagcagctcctgatattctccccttttgatcgaactgaatctccacaaacttaccaaaacgactg 139  Q
    ||||||||||||| ||||||||  |||||||||||||||||||| || ||||| ||||| || || || ||||||||||||||||||||||||||||||    
T  29902525 caaacacgtgatctttccagcaggtaagttctgatagcagctccagaaattcttcccttctggtcaaattgaatctccacaaacttaccaaaacgactg 29902623  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 29902724 - 29902788
Alignment:
Q  231 taccttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactg 295  Q
    ||||| ||||| || || |||||||| |||||||||||||| ||||||| |||||||||||||||    
T  29902724 tacctcgaattgttgtttctaacagtctttgcatttccaaaggcttctagaacaggattggactg 29902788  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 35831967 - 35832033
Alignment:
Q  232 accttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactgcat 298  Q
    |||| ||||| |||||||| |||||||| ||||| ||||||||||| | ||| ||||| ||||||||    
T  35831967 acctggaattgttattcctgacagttttggcattgccaaatgcttccagaactggatttgactgcat 35832033  T

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Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 27954273 - 27954377
Alignment:
Q  1 ataaaagcaatgataatttctctcaggatcagaaacttgacaaacacgtgatcgttccagcaaataagttctgatagcagctcctgatattctccccttt 100  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  27954273 ataaaagcattgataatttctctcaggatcataaacttgacaaacacgtgattgttccaacaaataatttctgatagcagctcctgatattctccccttt 27954372  T
Q  101 tgatc 105  Q
    |||||    
T  27954373 tgatc 27954377  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 26465569 - 26465432
Alignment:
Q  2 taaaagcaatgataatttctctcaggatcagaaacttgacaaacacgtgatcgttccagcaaataagttctgatagcagctcctgatattctcccctttt 101  Q
    |||||||||||||| |||||||| || ||||||||||| |||||||| |||| ||| || |  || || | ||| |||||||| || ||  |||| || |    
T  26465569 taaaagcaatgatagtttctctccgggtcagaaacttggcaaacacgagatctttcaaggaggtacgtacggatcgcagctccagaaatcttcccattct 26465470  T
Q  102 gatcgaactgaatctccacaaacttaccaaaacgactg 139  Q
      || || ||||| || |||||||||||||||||||||    
T  26465469 tgtcaaattgaatttcaacaaacttaccaaaacgactg 26465432  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 26465343 - 26465279
Alignment:
Q  231 taccttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactg 295  Q
    ||||||||||| || ||  | |||||||| ||||||||||||||||| || || |||||||||||    
T  26465343 taccttgaattgttgtttttcacagttttggcatttccaaatgcttccaacactggattggactg 26465279  T

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Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 39806531 - 39806400
Alignment:
Q  8 caatgataatttctctcaggatcagaaacttgacaaacacgtgatcgttccagcaaataagttctgatagcagctcctgatattctccccttttgatcga 107  Q
    ||||||||||||||||||||||| || |  || ||||||||||||| |||||||| |||||||||||||||||| || || ||||| || ||||||||||    
T  39806531 caatgataatttctctcaggatctgacagctggcaaacacgtgatctttccagcagataagttctgatagcagcacccgaaattcttcctttttgatcga 39806432  T
Q  108 actgaatctccacaaacttaccaaaacgactg 139  Q
    | ||||||||||||||||||||||||||||||    
T  39806431 attgaatctccacaaacttaccaaaacgactg 39806400  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 39806318 - 39806253
Alignment:
Q  232 accttgaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactgca 297  Q
    ||||||||||||||||||| ||||| |||||||| ||||| |||||||  |||||||| |||||||    
T  39806318 accttgaattattattcctgacagtctttgcattgccaaaagcttctaggacaggatttgactgca 39806253  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 47693871 - 47693811
Alignment:
Q  237 gaattattattcctaacagtttttgcatttccaaatgcttctaaaacaggattggactgca 297  Q
    ||||| |||||||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||    
T  47693871 gaattgttattcctgacagttttagcattaccaaatgcttccaaaactggatttgactgca 47693811  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 52154385 - 52154419
Alignment:
Q  14 taatttctctcaggatcagaaacttgacaaacacg 48  Q
    ||||||||||||||||| |||||||||||||||||    
T  52154385 taatttctctcaggatctgaaacttgacaaacacg 52154419  T

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