View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18491_low_9 (Length: 504)
Name: NF18491_low_9
Description: NF18491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18491_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 489
Target Start/End: Original strand, 46630947 - 46631425
Alignment:
| Q |
8 |
tagcataggaagaaaagcatttgaatggaggtggtaatggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaatt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46630947 |
tagcataggaagaaaagcatttgaatggaggtggtaaaggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaatt |
46631046 |
T |
|
| Q |
108 |
ttttaagctacctgctatctgtcatcatggagtttctgactgttgtaaacaaattggttttgaatgtatcgtcgatgctcctcttgccttccttgcaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
46631047 |
ttttaagctacctgctatctgtcatcatggagtttctgactgttgtaaacaaattggttttgaatgta---tcgatgctcctcttgccttacttgcaaat |
46631143 |
T |
|
| Q |
208 |
tgtgttctaaagctgccaaatgaatagacatactgtacnnnnnnnnttggtttgttttgatttccaaaatttccttatctctggttannnnnnnatttta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46631144 |
tgtgttctaaagctgccaaatgaatagacatactgtacaaaaaaaattggtttgttttgatttccaaaatttccttatctctggttatttttttatttta |
46631243 |
T |
|
| Q |
308 |
ttgaataaatcaaaatgttgtccaagtggatcaatgttggaaattttgtaatgtgttggttttccatttatttatacaatattggttgaattatattttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631244 |
ttgaataaatcaaaatgttgtccaagtggatcaatgttggaaattttgcaatgtgtttgttttccatttatttatacaatattggttgaattatattttg |
46631343 |
T |
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| Q |
408 |
actggtaccggaacatctatcttttgttaaatggatattgaacatcacagggtgagtgaacttcaatagtgtagcttatgat |
489 |
Q |
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| T |
46631344 |
actggtaccggaacatctatcttttgttaaatggatattgaacatcacacggtgagtgaacttcaatagtgtagcttatgat |
46631425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 46172828 - 46172622
Alignment:
| Q |
16 |
gaagaaaagcatttgaatggaggtggtaatggt---agctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaatttttta |
112 |
Q |
| |
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|||||||||||||||| ||||| ||||| | || ||||| ||||||||||| |||||||||||||||||| ||||| ||||| || || | |||||| |
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| T |
46172828 |
gaagaaaagcatttgattggagatggtagtagtgtcagctaaatatttgcaagccacttggttaagttaaagaatagagatcaatagtggtta-ttttta |
46172730 |
T |
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| Q |
113 |
agctacct-gctatctgtcatcatggagtttctgactgttgtaaacaaattggttttgaatgtatcgtcgatgctcctcttgccttccttgcaaattgtg |
211 |
Q |
| |
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|||| || ||||||||||||||||| || | | || ||| ||||||||||| ||||||||| | ||||||| ||| ||||| ||||||||||||| |
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| T |
46172729 |
agctttctacctatctgtcatcatggaattccag-cttttggaaacaaattggctttgaatgt---gccgatgcttctcctgcctgacttgcaaattgtg |
46172634 |
T |
|
| Q |
212 |
ttctaaagctgc |
223 |
Q |
| |
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|||||| ||||| |
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| T |
46172633 |
ttctaaggctgc |
46172622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 46639471 - 46639558
Alignment:
| Q |
314 |
aaatcaaaatgttgtccaagtggatcaatgttggaaattttg---taatgtgttggttttccatttatttatacaatattggttgaat |
398 |
Q |
| |
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|||||||||||| ||||||||||| |||||| ||||||||| | |||||||||| ||||||| |||||||||| |||| |||||| |
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| T |
46639471 |
aaatcaaaatgtcgtccaagtggaagaatgttagaaattttgtttttatgtgttggtcttccattcatttatacaacattgattgaat |
46639558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 46620454 - 46620503
Alignment:
| Q |
48 |
tagctacatatttgcaagttacttggttaagttaaagagtagaggtcaat |
97 |
Q |
| |
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|||||| ||||||||||| | |||||||||||||||||||||||||||| |
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| T |
46620454 |
tagctagatatttgcaagccaattggttaagttaaagagtagaggtcaat |
46620503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 15767976 - 15767700
Alignment:
| Q |
16 |
gaagaaaagcatttgaatggaggtggtaatggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagc |
115 |
Q |
| |
|
|||||||| ||||||| ||||| | ||| || |||||| || ||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
15767976 |
gaagaaaaacatttgattggagatcgtagtgttagctaaatgttttcaagctacttggttaagttaaagagtagaggtcaatagtggtaattttttaagt |
15767877 |
T |
|
| Q |
116 |
tacctg-ctatctgtcatcatggagtttctgactgttgtaaacaaattggttttgaatgtatcgtcgatgctcctcttgccttccttgcaaattgtgttc |
214 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||| |||||||||| ||||||||||| |||| |
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| T |
15767876 |
tacctgcctatctgtcatcatggagtttctgacttttgtaatcaaattggttttgaatgta---ttaatgcttctcttgccttacttgcaaattgagttc |
15767780 |
T |
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| Q |
215 |
taaagctgccaaatgaatagacatactgtacnnnnnnnnttggtttgttttgatttccaaaatttccttatctctggtta |
294 |
Q |
| |
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||| |||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |
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| T |
15767779 |
taaggctgccaaatgactagacatactgtacaaaaaaatttggtttattttgatttccaaaatttccttttctctggtta |
15767700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 342 - 489
Target Start/End: Complemental strand, 15767683 - 15767536
Alignment:
| Q |
342 |
tgttggaaattttgtaatgtgttggttttccatttatttatacaatattggttgaattatattttgactggtaccggaacatctatcttttgttaaatgg |
441 |
Q |
| |
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|||||||| |||||| ||||||||||||||| || |||||||||| || |||||| |||||||||||| |||||| || |||||||||||||||||||| |
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| T |
15767683 |
tgttggaagttttgttatgtgttggttttccgttcatttatacaacataggttgagttatattttgacgggtaccaaaatatctatcttttgttaaatgg |
15767584 |
T |
|
| Q |
442 |
atattgaacatcacagggtgagtgaacttcaatagtgtagcttatgat |
489 |
Q |
| |
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||||||||||| ||| | ||||| ||| ||||| ||||| |||||| |
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| T |
15767583 |
atattgaacattacaccgggagtgtgcttaaatagcgtagcatatgat |
15767536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 18373856 - 18373693
Alignment:
| Q |
16 |
gaagaaaagcatttgaatggaggtggtaatggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagc |
115 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| || |||||| ||||||||||| | |||||||||||||||||||||||||||| ||| | | ||||||| |
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| T |
18373856 |
gaagaaaaacatttcaatggagatggtagtgttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagttattttcttttaaga |
18373757 |
T |
|
| Q |
116 |
tacctg-ctatctg---tcatcatggagtttctgactgttgtaaacaaattggttttgaatgta |
175 |
Q |
| |
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||| || ||||||| |||||||||||||| |||| ||| ||||||| |||||| ||||||| |
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| T |
18373756 |
tacatgcctatctgtcatcatcatggagtttttgacctttggaaacaaaatggtttagaatgta |
18373693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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