View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_high_10 (Length: 429)
Name: NF18492_high_10
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 28825013 - 28825413
Alignment:
| Q |
13 |
aatattaggcacctggtcatttctttgagtttctttcaatttcatgtttgataaaatgatttaatggacttattctttgatggaaatatgtgaaattttg |
112 |
Q |
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| T |
28825013 |
aatattaggcacctggacatttctttgagtttctttcaatttcatgtttgataaaatgatttaatggacttattctttgatggaaagatgtggaattttg |
28825112 |
T |
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| Q |
113 |
tgtgatattatgataaggcaaatttgaaaatctataactcataaacctaagaatgattgaaaaagaaagaaaatggagacacttaaatttccaatccaag |
212 |
Q |
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| T |
28825113 |
tgtgatattatgataaggcaaatttgaaaacctataactcataaacctaagaatgattgaaaaagaaagaaaatggagacacttaaatttccaatccaag |
28825212 |
T |
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| Q |
213 |
aaagatgattgtccagtgtgtgatcgccaaag-aaacgtggtttcttgataagattatataatggtccaaagtagaacccaagaaaaaatactctcagat |
311 |
Q |
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| T |
28825213 |
aaagatgattgttcagtgtgtgatcgccaaagaaaacgtagtttcttgataagattatataatagtccaaactagaacccaagaaaaaatactctcatat |
28825312 |
T |
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| Q |
312 |
tacacaaagtgtaaaaatttagcaaaattctttatttcttatgtgagttagacgcccccttatataggaatgacatttgattctgatttaaacatagtgt |
411 |
Q |
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| T |
28825313 |
tacacaaagtgtaaaaatttagcaaaattctttatttcttatgtgagttagacgcccccttatataggaatgacatttgattctgatttaaacatagtgt |
28825412 |
T |
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| Q |
412 |
a |
412 |
Q |
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| T |
28825413 |
a |
28825413 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 7269404 - 7269472
Alignment:
| Q |
320 |
gtgtaaaaatttagcaaaattctttatttcttatgtgagttagacgcccccttatataggaatgacattt |
389 |
Q |
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||||||||||||||||||||| | ||||| | |||||||||| || |||||||||||||||||||||||| |
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| T |
7269404 |
gtgtaaaaatttagcaaaattttctatttttcatgtgagttacac-cccccttatataggaatgacattt |
7269472 |
T |
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