View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_high_11 (Length: 400)
Name: NF18492_high_11
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 32207663 - 32207274
Alignment:
| Q |
11 |
tctgtcatataacacaaatcacagtgtttaaagtaacatgttttatgtctcaaaatttataggagagaaagagtactatgaaagacaatttgcaactcta |
110 |
Q |
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| T |
32207663 |
tctgtcatataacacaaatcacagtgtttaaggtaacatgttttatgtctcaaaatttataggagagaaagagtactatgaaagacaatttgctactcta |
32207564 |
T |
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| Q |
111 |
aaatcatttgaggaagttgactccatagtaatgtcggattccattgttatagaagacatagagaagcaggctcaacatgaactagcgatgaagatttcta |
210 |
Q |
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| T |
32207563 |
aaatcatttgaggaagttgactccatagtagtgtcggattccattgatatagaagacatggagaagcgggctcaacatgaactagcgatgaagatttcaa |
32207464 |
T |
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| Q |
211 |
actatgcaaatgcagttttattggcattaaaggtgatattccttaagatatttctattcctttgaacatactttcttaccttgcaacatgtaaataacaa |
310 |
Q |
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| T |
32207463 |
actatgcaaatgcagttttattggcattaaaggtgatattcctaaagatgtttatattctcttgaacatacttgcttatcttgcaacagttaaataacaa |
32207364 |
T |
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| Q |
311 |
tatgcatatacatatctagatttatgtgacacttaggactggatctatggctattgctgcttcaacattggattctctgcttgacttcat |
400 |
Q |
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| T |
32207363 |
tatgcatatacatgtctagatttatgtgacaatcaggactggatctatggctattgctgcttcaacattggattctctgcttgacttcat |
32207274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 28297065 - 28297008
Alignment:
| Q |
70 |
taggagagaaagagtactatgaaagacaatttgcaactctaaaatcatttgaggaagt |
127 |
Q |
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| T |
28297065 |
taggagagaaagagtactatgaaaaacaaattgctacactgaaatcgtttgaggaagt |
28297008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 28296370 - 28296321
Alignment:
| Q |
345 |
aggactggatctatggctattgctgcttcaacattggattctctgcttga |
394 |
Q |
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|||| ||||||||| |||||||| || ||||| ||||||||||||||||| |
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| T |
28296370 |
aggagtggatctatagctattgcagcatcaactttggattctctgcttga |
28296321 |
T |
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