View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_high_12 (Length: 376)
Name: NF18492_high_12
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_12 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 3448754 - 3449087
Alignment:
| Q |
18 |
gttttctcatatactatgatgtaaccaaaaactacatactatggtgtagaaacttattagttaaataattatgttacaaacatcaagaataaacacgata |
117 |
Q |
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| T |
3448754 |
gttttctcatatactatgatgtaaccaaaaactacatactatggtgtagaaacttattagttaaataattatgttacaaacatcaagaataaacacgata |
3448853 |
T |
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| Q |
118 |
cctaaataacattaggatacatgtgattatgaaacataaagagaaacggataacactacctgaactatgtgttggcttgttgttcttccaatgccttatt |
217 |
Q |
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| T |
3448854 |
cctaaataacattaggatacatgtgattctgaaacataaagagaaacggataacactacctgaactatgtgttggcttgttgttattccaatgccttatt |
3448953 |
T |
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| Q |
218 |
aggctcttgttctaaaactggtgagaagacttcagatacagtnnnnnnnccaatatgcagcaacgtgtatggtttgttttaatcaccctatatataagtg |
317 |
Q |
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| T |
3448954 |
aggctcttgttctaaaactggtgagaagacttcagatacagt-aaaaaaccaatatgcagcaacgtgtatggtttgttttaatcaccctatatataagtg |
3449052 |
T |
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| Q |
318 |
tgtgatggttaaatatgattcccatttccctcaac |
352 |
Q |
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| T |
3449053 |
tgtgatggttaaatatgattcccatttccctcaac |
3449087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 226936 - 226760
Alignment:
| Q |
67 |
aaacttattagttaaataattatgttacaaacatcaagaataaaca-------cgatacctaaataacattaggatacatg----tgattatgaaacata |
155 |
Q |
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| T |
226936 |
aaacttaatagtcaaataattatgttacaaacgtcaagaataaacaataaacacaataccaagataacattaggatacatgagagtgattctgaaacata |
226837 |
T |
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| Q |
156 |
aagagaaacggataac-actacctgaactatgtgttggcttgttgttcttccaatgccttattaggctcttgttcta |
231 |
Q |
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| T |
226836 |
aagagagaccgataaagaatacctgaattatatgttggcctgttgatctttcaatgtctttttaagctcttgttcta |
226760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 19443752 - 19443970
Alignment:
| Q |
28 |
atactatgatgtaaccaaaaactacatactatggtgtagaaacttattagttaaataattatgttacaaacatcaagaataaacacgatac------cta |
121 |
Q |
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| T |
19443752 |
atactatgatgtagcaaaaatatatacactatgatgcagaaacttaatagttaaataattatgttacagacgtcaagaataaacagtaaacacaatacta |
19443851 |
T |
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| Q |
122 |
a----ataacattaggataca----tgtgattatgaaacataaagagaaacggat-aacactacctgaactatgtgttggcttgttgttcttccaatgcc |
212 |
Q |
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| T |
19443852 |
ataatataacattaggatacatgactgtggttctgaaacataaagagagatggataaagtctacctgaactatgtgttggtttgttgatttttcaatgtc |
19443951 |
T |
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| Q |
213 |
ttattaggctcttgttcta |
231 |
Q |
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| T |
19443952 |
tttttaggctcttgctcta |
19443970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 19437657 - 19437741
Alignment:
| Q |
28 |
atactatgatgtaaccaaaaactacatactatggtgtagaaacttattagttaaataattatgttacaaacatcaagaataaaca |
112 |
Q |
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| T |
19437657 |
atactatgatgtaacaaaaaaaaaaatactacgatgcataaacttaatagttaaataattatgttacaaacgtcaagaataaaca |
19437741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 34658656 - 34658571
Alignment:
| Q |
147 |
tgaaacataaagagaaacggataac-actacctgaactatgtgttggcttgttgttcttccaatgccttattaggctcttgttcta |
231 |
Q |
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| T |
34658656 |
tgaaacataaagagagatgggtaaagactacctgaactatgtgttggcttgttgatctttcggtgtctttttaggctcttgctcta |
34658571 |
T |
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