View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18492_high_18 (Length: 322)

Name: NF18492_high_18
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18492_high_18
NF18492_high_18
[»] chr3 (1 HSPs)
chr3 (9-304)||(41085688-41085983)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 41085688 - 41085983
Alignment:
Q  9 gacatcatcatattcatagcattagaatcaggccatagaacatcttgtaccacatcttcatcaacacctagaaacccttcaaactgatcatattcaatcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41085688 gacatcatcatattcatagcattagaatcaggccatagaacatcttgtaccacatcttcatcaacacctagaaacccttcaaactgatcatattcaatcc 41085787  T
Q  109 cactcaaactcaactcatgttcacctccataattctgaacctcatcaaaaggtttatgaggctggaccactgcatcattctccgtttcaacgctttccgg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41085788 cactcaaactcaactcatgttcacctccataattctgaacctcatcaaaaggtttatgaggctggaccactgcatcattctccgtttcaacgctttccgg 41085887  T
Q  209 tgtcgatgacaaattgttaatattgttggaagaagaagacagtccattattattaacctcactctcaatttccaattcctcatcaccatgatgagt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41085888 tgtcgatgacaaattgttaatattgttggaagaagaagacagtccattattattaacctcactctcaatttccaattcctcatcaccatgatgagt 41085983  T

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