View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_high_19 (Length: 295)
Name: NF18492_high_19
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 144 - 281
Target Start/End: Original strand, 44640955 - 44641092
Alignment:
| Q |
144 |
atttgtataatttaaagctgaagaggcccatagtatttgtttggaatccctcccgtgttgagtaagttgttaatcaatttaattccattccttttcttga |
243 |
Q |
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| T |
44640955 |
atttgtataatttaaagctgaagaggcccatagtatttgtttggaatccctcccgtgtcgagtaagttgttaatcaatttaattccattccttttcttga |
44641054 |
T |
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| Q |
244 |
ggggtaatccactactctatccaatgtaatccatgatt |
281 |
Q |
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| T |
44641055 |
ggggtaatccactactctatccaatgtaatccatgatt |
44641092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 44640829 - 44640901
Alignment:
| Q |
17 |
agttagagtttgaactttaaatttctcaattattcaatttaagattgaatttctagctagtaatcaatttgac |
89 |
Q |
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| T |
44640829 |
agttggagtttaaacttcaaatttctcaattattcaatttaagactgaatttctagctagtaatcaatttgac |
44640901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 44651479 - 44651543
Alignment:
| Q |
222 |
ttaattccattccttttcttgaggggt--aatccactactc-tatccaatgtaatccatgatttt |
283 |
Q |
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| T |
44651479 |
ttaatttcattccatttcttgaggggtaaaatccactagtcttatccaatgtaatccatgttttt |
44651543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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