View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_high_2 (Length: 620)
Name: NF18492_high_2
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Complemental strand, 39877556 - 39876941
Alignment:
| Q |
1 |
aaactccagattgtcaggcctttgttttttgggatttggttcatcctttagcctatgtgtatgaatgaatggatctctctttgataacacctcttaatat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877556 |
aaactccagattgtcaggcctttgttttttgggatttggttcatcctttagcctatgtgtatgaatgaatggatctctctttgataacacctcttaatat |
39877457 |
T |
|
| Q |
101 |
cctacaggtgtggatttgaagtgaggatacttcctaaaaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatctccagaat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877456 |
cctacaggtgtggatttgaagtgaggatacttcctaaaa--ttagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatctccagaat |
39877359 |
T |
|
| Q |
201 |
gaacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877358 |
gaacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgt |
39877259 |
T |
|
| Q |
301 |
gttctaatacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaagttgagttttagga-nnnnnnnngcagagatttttgtcaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39877258 |
gttctaatacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaagttgagttttaggatttttttttgcagagatttttgtcaa |
39877159 |
T |
|
| Q |
400 |
tttttcccctgactctggttcttttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaa |
499 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877158 |
tttttcccctgactctggttcttttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaa |
39877059 |
T |
|
| Q |
500 |
ataaaattcagactcgtatcaagattggactcaactcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggaacttttagtccc |
599 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39877058 |
ataaaattcagactcgtatcaagattggactcagctcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggaacttttagtccc |
39876959 |
T |
|
| Q |
600 |
gttgatcaaatctgtgtt |
617 |
Q |
| |
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|||||||||||||||||| |
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| T |
39876958 |
gttgatcaaatctgtgtt |
39876941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 2 - 617
Target Start/End: Complemental strand, 44780784 - 44780176
Alignment:
| Q |
2 |
aactccagattgtcaggcctttgttttttgggatttggttcatcctttagcctatgtgtatgaatgaatggatctctctttgataacacctcttaatatc |
101 |
Q |
| |
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||||||||||| |||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44780784 |
aactccagattatcagtcctttgtttttttgg-----gttcatcctttaacctatgtgtatgaatgaatggatctctctttgataacacctcttaatatc |
44780690 |
T |
|
| Q |
102 |
ctacaggtgtggatttgaagtgaggatacttcctaaaaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatctccagaatg |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44780689 |
ctacaggtgtggatttgaagtgaggatacttcc--aaaaattagaatgactcaagaagcattcagtaacacaagagatggtgtctggaatctccagaatg |
44780592 |
T |
|
| Q |
202 |
aacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgtg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44780591 |
aacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcggg |
44780492 |
T |
|
| Q |
302 |
ttctaatacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaagttgagttttaggannnnnnnngcagagatttttgtcaatt |
401 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||| |
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|
| T |
44780491 |
ttctactacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaatttgagttctaggagtttttttgcagaggtttttgtcaatt |
44780392 |
T |
|
| Q |
402 |
tttcccctgactctggttcttttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaaat |
501 |
Q |
| |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44780391 |
ttttccctgactttggttcttttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaaat |
44780292 |
T |
|
| Q |
502 |
aaaattcagactcgtatcaagattggactcaactcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggaacttttagtcccgt |
601 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |
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| T |
44780291 |
aaaattcagactcgtatcaagattggactcaactcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggagctttgagttcaaa |
44780192 |
T |
|
| Q |
602 |
tgatcaaatctgtgtt |
617 |
Q |
| |
|
|| ||||||||||||| |
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| T |
44780191 |
tgttcaaatctgtgtt |
44780176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 9e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 108 - 352
Target Start/End: Original strand, 2898520 - 2898762
Alignment:
| Q |
108 |
gtgtggatttgaagtgaggatacttcctaaaaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatctccagaatgaacaga |
207 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | |
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| T |
2898520 |
gtgtggatttgaagtgcggatacttcctaaaa--ttagaacgactcaagaagcattcggtaacacaagagatggtgtttggaatctccagaatgaacaaa |
2898617 |
T |
|
| Q |
208 |
caaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgtgttctaa |
307 |
Q |
| |
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| |||||||| |||||| ||| |||||||||||||| |||||||| || || ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
2898618 |
ccaaagaaaggacagctactgctttcttaagagttgatgatgaacagattaaaatgtttgagaatcgtgtgaggcagattcttatgtcttcgggttctac |
2898717 |
T |
|
| Q |
308 |
tacattcacaaaaattgtcaataagtggaatacagctttaatagg |
352 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2898718 |
tacattcacaaaaattgtcaataagtggaatacagctttaatagg |
2898762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 426 - 551
Target Start/End: Original strand, 2898760 - 2898885
Alignment:
| Q |
426 |
aggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaaataaaattcagactcgtatcaagatt |
525 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
2898760 |
aggactcatgacttacttccgagaggcaactgtacatactcaagagttgttggatttgcttgtcaaatgtgaaaataaaattcagacccgtatcaagata |
2898859 |
T |
|
| Q |
526 |
ggactcaactcaaagatgcctagcag |
551 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
2898860 |
ggactcaactcaaagatgcctagcag |
2898885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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