View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_high_20 (Length: 277)
Name: NF18492_high_20
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_20 |
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| [»] scaffold0903 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 21717090 - 21716884
Alignment:
| Q |
10 |
acatcatcatagggaggttacagccacaaacaggtaacatagacatcatctgcttggggttacgaccaccgctgtttgggttacggccaatgctgcggaa |
109 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
21717090 |
acatcctcatagggaggttacaaccacaaacaggtaacatagacatcatctgcttggggttacgaccaccgctgtttgggttacggccactgctgcggga |
21716991 |
T |
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| Q |
110 |
tccaccaccaatattgcgcgatccaccgtttccagaaattgaaaatgagtgagatcctctgctattcgaatactctctactgcttgacatcttcgtgcaa |
209 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
21716990 |
tccaccaccaatattgcacgatccaccgtttctggaaattgaaaatgagtgagatcctctgctattcgaataccctctactgcttgacatcttcgcgcaa |
21716891 |
T |
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| Q |
210 |
tgattgg |
216 |
Q |
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||||||| |
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| T |
21716890 |
tgattgg |
21716884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 20656645 - 20656754
Alignment:
| Q |
63 |
ttggggttacgaccaccgctgtttgggttacggccaatgctgcggaatccaccaccaatattgcgcgatccaccgtttccagaaattgaaaatgagtgag |
162 |
Q |
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|||| |||||||||||| |||||| |||||| ||| | |||| ||| ||||||| | ||||| ||||||||||||| ||| |||||||||||||||| |
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| T |
20656645 |
ttggtgttacgaccaccattgtttgcgttacgaccaccgttgcgagatctaccaccactcttgcgggatccaccgtttctagagattgaaaatgagtgag |
20656744 |
T |
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| Q |
163 |
atcctctgct |
172 |
Q |
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| T |
20656745 |
aacctctgct |
20656754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 20656571 - 20656640
Alignment:
| Q |
10 |
acatcatcatagggaggttacagccacaaacaggtaacatagacatcatctgcttggggttacgaccacc |
79 |
Q |
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| T |
20656571 |
acatcctcatagggagtttacaaccacaaataggtagcgtacacatcatctggttcgggttacgaccacc |
20656640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0903 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0903
Description:
Target: scaffold0903; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 673 - 467
Alignment:
| Q |
10 |
acatcatcatagggaggttacagccacaaacaggtaacatagacatcatctgcttggggttacgaccaccgctgtttgggttacggccaatgctgcggaa |
109 |
Q |
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||||| |||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
673 |
acatcctcatagggaggttacatccacaaacaagtaacatagatatcatctgcttggggttacgaccaccgctgtttgggttacgaccaccgctatttgg |
574 |
T |
|
| Q |
110 |
tccaccaccaatattgcgcgatccaccgtttccagaaattgaaaatgagtgagatcctctgctattcgaatactctctactgcttgacatcttcgtgcaa |
209 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| |||| |
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| T |
573 |
gttacgaccaatattgcgcgatccaccgtttctggaaattgaaaatgagtgagatcctctgctattcgaataccctctattgcttgacatcatcgcgcaa |
474 |
T |
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| Q |
210 |
tgattgg |
216 |
Q |
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||||||| |
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| T |
473 |
tgattgg |
467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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