View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_high_21 (Length: 269)
Name: NF18492_high_21
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 46677456 - 46677214
Alignment:
| Q |
8 |
ggagtagcataggtactgatgcatatgtccgagagtcgagcatccatgcaaggggcgttcttgatcttataagatgagaaaatgattggttgcgatgttt |
107 |
Q |
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| T |
46677456 |
ggagcagcagaggtactgatgcatatgtccgagagtcgagcatccatgcaaggggcgttcttgatcttataagatgagaaaatgattggttgcgatgttt |
46677357 |
T |
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| Q |
108 |
ttatgtcaaacgtggggatcacaatatttgtgagtgtttcatgtacacgaatttccccaagcttctccctaaccacactgtgtaggtaattcccatcgta |
207 |
Q |
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| T |
46677356 |
ttatgtcaaacgtggggatcacaatatttgtgagtgtttcatgtacacgaatttccccaagcttctccctaaccacactgtgtaggtaattcccatcgta |
46677257 |
T |
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| Q |
208 |
ttttggtcctgctaatgatttgaacaatttccccaccgatccc |
250 |
Q |
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| T |
46677256 |
ttttggtcctgctaatgatttgaacaatttccccaccgatccc |
46677214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 46681428 - 46681204
Alignment:
| Q |
13 |
agcataggtactgatgcatatgtccgagagtcgagcatccatgcaaggggcgttcttgatcttataagatgagaaaatgattggttgcgatgtttttatg |
112 |
Q |
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| T |
46681428 |
agcagaggtgctgatacatatgtctgagagtcgagcatccatgcatggagttttcttgatcttataagatgagaaaataattggttgcattgtttttatg |
46681329 |
T |
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| Q |
113 |
tcaaacgtggggatcacaatatttgtgagtgtttcatgtacacgaatttccccaagcttctccctaaccacactgtgtaggtaattcccatcgtattttg |
212 |
Q |
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| T |
46681328 |
tcaaatgtgggaatcacaatattggtcagcgtctcgtgcacacgaatttcccccaacttctccctcaccacttcgtgaaggtatttcccatcatattttg |
46681229 |
T |
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| Q |
213 |
gtcctgctaatgatttgaacaattt |
237 |
Q |
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| T |
46681228 |
gtcctaccaatgatctgaacaattt |
46681204 |
T |
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