View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_high_23 (Length: 254)
Name: NF18492_high_23
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 39877533 - 39877760
Alignment:
| Q |
11 |
caaaggcctgacaatctggagtttgttaatgatggtatcccttcttagacaaccttgctgataaaggaacatattcatcatcatcatcttcagattcata |
110 |
Q |
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| T |
39877533 |
caaaggcctgacaatctggagtttgttaatgatggtatcccttcttagacaaccttgctgataaaggaacatcatcatcatcatcatcttcagattcata |
39877632 |
T |
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| Q |
111 |
gtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagccatttaaaattgaagcgtccttcatcatcaccaacacataaatttgggtta |
210 |
Q |
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| T |
39877633 |
gtcttcacgagaatctgaatgcgatgtttttttatcgaatgatgtgagccatttaaaattgaagcgtccttcatcatcaccaacacataaatttgggtta |
39877732 |
T |
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| Q |
211 |
ttagaagcctcgacaacatccatgattc |
238 |
Q |
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| T |
39877733 |
ttagaagcctcgacaacatccatgattc |
39877760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 39422853 - 39423004
Alignment:
| Q |
86 |
catcatcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagccatttaaaattgaagcgtccttcatc |
185 |
Q |
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| T |
39422853 |
catcatcatcatcttcagattcatagtctttacaagaatctgaatgcgatgtttttttatcgaatgatgtgtgccatttaaaattgaagtgtccttcatc |
39422952 |
T |
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| Q |
186 |
atcaccaacacataaatttgggttattagaagcctcgacaacatccatgatt |
237 |
Q |
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| T |
39422953 |
atcaccaacacataaatttgggttatcagaagcctcaacaacatccatgatt |
39423004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 51 - 233
Target Start/End: Original strand, 39416668 - 39416847
Alignment:
| Q |
51 |
cttcttagacaaccttgctgataaaggaacatattcatcatcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaat |
150 |
Q |
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| T |
39416668 |
cttcttagcaaaccttgctgacaaaggaacat---catcatcatcatcatcagattcaaagtcttcacgtgaagctgaatgcgatgtttttttatcgaat |
39416764 |
T |
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| Q |
151 |
gatgtgagccatttaaaattgaagcgtccttcatcatcaccaacacataaatttgggttattagaagcctcgacaacatccat |
233 |
Q |
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| T |
39416765 |
gatgcaagccatttaaaattgaagtgctcttcatcatcaccaacacaaaaaattggcttatcagaagcctcaacaacatccat |
39416847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 39488380 - 39488512
Alignment:
| Q |
86 |
catcatcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagccatttaaaattgaagcgtccttcatc |
185 |
Q |
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| T |
39488380 |
catcatcatcatcttcagattcatagtcttcacgagaagctgaatgcgatgtttttttatcaaatgatgcgagccatttaaaatttaagtgttcttcatc |
39488479 |
T |
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| Q |
186 |
atcaccaacacataaatttgggttattagaagc |
218 |
Q |
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| T |
39488480 |
atcaccaccacaaaattttagcttattagaagc |
39488512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 39474588 - 39474719
Alignment:
| Q |
90 |
atcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagccatttaaaattgaagcgtccttcatcatca |
189 |
Q |
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| T |
39474588 |
atcatcatcttcagattcaaagtcttgacgaaaaggtgaatgcaatgtacttttatcgaatgatgttagccatttaaaatttaaatgttcttcatcatct |
39474687 |
T |
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| Q |
190 |
ccaacacataaatttgggttattagaagcctc |
221 |
Q |
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| T |
39474688 |
ccaacacaaaaatttggcttatcagaagcctc |
39474719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 39151598 - 39151444
Alignment:
| Q |
61 |
aaccttgctgataaaggaacatattcatcatcatcatcttcagattcatagtcttcacgagaatctgaatgcgatgnnnnnnnatcgaatgatgtgagcc |
160 |
Q |
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| T |
39151598 |
aaccttgctgacaaaggaacat---catcatcttcatcttcagattcaaagtcttcgcgagaagctgaatgagatgtttttatctcgcacgatgcaatcc |
39151502 |
T |
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| Q |
161 |
atttaaaattgaagcgtccttcatcatcaccaacacataaatttgggttattagaagc |
218 |
Q |
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| T |
39151501 |
gtttaaagttgaagcgtccttcatcatcacctacacaaaattttagcttattagaagc |
39151444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 39469893 - 39469846
Alignment:
| Q |
148 |
aatgatgtgagccatttaaaattgaagcgtccttcatcatcaccaaca |
195 |
Q |
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| T |
39469893 |
aatgatgtgagccatttaaaattcaagagttcttcatcatcaccaaca |
39469846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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