View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18492_high_4 (Length: 547)
Name: NF18492_high_4
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Complemental strand, 26733729 - 26733202
Alignment:
| Q |
8 |
agtgagatgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctttcctttcattgannnnnnnagctttagcaacgcatcaag |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
26733729 |
agtgagctgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctctcctttcattgatttttttagctttagcaacgcatcaag |
26733630 |
T |
|
| Q |
108 |
atcattatttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctcagttttgtaccta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26733629 |
atcattatttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgtttttcatctttctcttttgctcagttttgtaccta |
26733530 |
T |
|
| Q |
208 |
tgaattggtttgcaatgtttgcattgggtgtatttaatttctctttttggtaccacac-----tcacactacatgcagtgattgcattctgtatttataa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26733529 |
tgaattggtttgcaatgtttgcattgggtgtatttaatttctctttttggtaccacaccactctcacactacatgcagtgattgcattctgtatttataa |
26733430 |
T |
|
| Q |
303 |
taagtacaattatagttaatttaattgatgttatcttattggttaacatatggtagagtggagtataatctttgtgtaatatcctatttcccactagtta |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26733429 |
taagtacaattatagttaatttaattgatgttatcttattggttaacatatggtagagtggagtataatctttgtgtaatatcctatttcccactagtta |
26733330 |
T |
|
| Q |
403 |
agtccacgagtagacttaatttacttttgtaacaaagatgcaattctttgtaaaagacacactttagaatgaaaccaaagttgatttatgtatttttcca |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26733329 |
agtccacgagtagacttaatttacttttgtaacaaagatgcaattctttgtaaaagacacactttggaatgaaaccaaagttgatttatgtatttttcca |
26733230 |
T |
|
| Q |
503 |
aattnnnnnnngaaactggagagaagaa |
530 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
26733229 |
aattaaaaaaagaaactggagagaagaa |
26733202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 26725408 - 26725058
Alignment:
| Q |
15 |
tgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctttcctttcattgannnnnnnagctttagcaacgcatcaagatcatta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26725408 |
tgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctctcctttcattgatttttttagctttagcaacgcatcaagatcatta |
26725309 |
T |
|
| Q |
115 |
tttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctcagttttgtacctatgaattg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26725308 |
tttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctaagttttgtacctatgaattg |
26725209 |
T |
|
| Q |
215 |
gtttgcaatgtttgcattgggtgtatttaatttctctttttggtaccacactcacactacatgcagtgattgcattctgtatttataataagtacaatta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26725208 |
gtttgcaatgtttgcattgggtgtatttaatttctctttttggtaccacactcacactacatgcagtgattgcattctatatttataataagtacaatta |
26725109 |
T |
|
| Q |
315 |
tagttaatttaattgatgttatcttattggttaacatatggtagagtggag |
365 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||||| |||||||| |
|
|
| T |
26725108 |
tagttaatttaattgatattatcttatttgttcacatatggtggagtggag |
26725058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 424 - 506
Target Start/End: Complemental strand, 26724814 - 26724732
Alignment:
| Q |
424 |
tacttttgtaacaaagatgcaattctttgtaaaagacacactttagaatgaaaccaaagttgatttatgtatttttccaaatt |
506 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
26724814 |
tacttttgtgacaaagatgcaattctttgttaaagacgcactttggaatgaaaccaaagttgatttatgtagtttgccaaatt |
26724732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University