View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_high_5 (Length: 541)
Name: NF18492_high_5
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 5965343 - 5965699
Alignment:
| Q |
17 |
aatatctagtatgtctcttattccaaatggttaatttagtagtacttatattatatatgccccagcaatctgctatcctgactaaaccttcccaggttct |
116 |
Q |
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| T |
5965343 |
aatatctagtatgtctcttattccaaatggttaatttagtagtacttatattatatatgccccagcaatctgctatcctgactaaaccttcccaggttct |
5965442 |
T |
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| Q |
117 |
ggccaatacacattgcaaatgctccaccacaattattag-tacctgtgtatctgcccttcaagcatggacaaacaataccatcacatgtaacaatccttg |
215 |
Q |
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| T |
5965443 |
ggccaatacacattgcaaatgttccaccacaattattaggtacctgtgtatctgcccttcaagcatggacaaacaataccatcacatgtaacaatccttg |
5965542 |
T |
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| Q |
216 |
attggcaccaaatatccctaactagttatgctatttttattctttgcccatatcatgaattattactcatgggaccataaaagtgtatatttaagttatc |
315 |
Q |
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| T |
5965543 |
attggcagcaaatatccttaactagttatgctatttttattctttgcccatatcatgaattattactcatgggaccataaaagtgtatatttaagttatc |
5965642 |
T |
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| Q |
316 |
tgattcaaccaatcaaatatattaatactatgacctatttttaattcataatactgactaactt |
379 |
Q |
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| T |
5965643 |
tgattcaaccaatcaa-------aatactataacctatttttaattcataatactgactaactt |
5965699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 362 - 523
Target Start/End: Original strand, 5965715 - 5965871
Alignment:
| Q |
362 |
cataatactgactaacttacgttagatcttcattcactttcgatgcccaaattaaatattatcatcttttaattttctcattttactaacaagtcgtttt |
461 |
Q |
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| T |
5965715 |
cataatactgactaacttacgttagatcttcattcactttcgatgcccaaat-----attatcatcttttaattttctcattttactaacaagtcgtttt |
5965809 |
T |
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| Q |
462 |
aggcatagttaaattcttttgatccaactcttgttattcaagttgaaaatagcaatactaga |
523 |
Q |
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| T |
5965810 |
aggcatagttaaattctttttatccaactcttgttattcaaattgaaaatagcaatactaga |
5965871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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