View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18492_high_6 (Length: 508)
Name: NF18492_high_6
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Original strand, 45002636 - 45003114
Alignment:
| Q |
19 |
gttagattgttgtgttgccataaatacagtttcatagtgtgttgattgtcttagattatgtttagaacaagtaaacattctcttgacctaaaatgatgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45002636 |
gttagattgttgtgttgccataaatacagtttcatagtgtgttgattgtcttagattatgtttagaacaagtaaacattctcttgacctaaaatgatgct |
45002735 |
T |
|
| Q |
119 |
aataatgaattcgaaatactttttgggcagatggaattggaacaaacttttttctttcttttaggtgctgaaatgtagaaaaatggccacaatagtggat |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45002736 |
aacaatgaattcgaaatactttttgggctgatggaattggaacaaatttttttctttcttttaggtgctgaaatgtagaaaaatggccacaatagtggat |
45002835 |
T |
|
| Q |
219 |
ttgatgcatgccaaggtcagaattgtgtcaaaatggtttgaaaaatctctagcactgatgtccaggacactggcttcgatgcaagggtctgggctgccta |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45002836 |
ttgatgcatgccaaggtctgaattgtgtcaaaatggtttgaaaaatctctagcactgatgtccaggacattggcttcgatgcaagggtctgggctgccta |
45002935 |
T |
|
| Q |
319 |
atttggatgacccgtcatggtttcaatggtcccaaataaattctaactcttattatcatcatcattatcttatctcttctaacttgtaagcatagagaga |
418 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
45002936 |
atttggacgacccgtcatggtttcaatggtcccaaataaattctaactcttattatcatcatcattatcttagctcttctaacttgtaaggatagagaga |
45003035 |
T |
|
| Q |
419 |
atgtataggttggtattaaaagtccattaagtttctagtcaaccttatgttaattaggttaatgttgataagttagata |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45003036 |
atgtataggttggtattaaaagtccattaagtttctagtcaaccttatgttaattaggttaatgttgataagttagata |
45003114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University