View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_high_9 (Length: 483)
Name: NF18492_high_9
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 78 - 466
Target Start/End: Original strand, 36545959 - 36546344
Alignment:
| Q |
78 |
tgtgagattaaaagcttagaatgaacaaattaagctgtattgtgttgtttctatatatttctgtaacgtttgaagcatccatcatagtattatgatatca |
177 |
Q |
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| T |
36545959 |
tgtgagagtaaaagcttagaatgaacaaattaagctgtattgtgtggtttctatatatttctgtaacgtttgaagcatc----atagtattatgatatca |
36546054 |
T |
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| Q |
178 |
tgtttgcaacaaattcgaccgttgggaccctttgctgaaaaattaattaagtttttgattaatgtattcaatgtaacgtttgggc---tgtaatatcaat |
274 |
Q |
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| T |
36546055 |
tgtttgcaacaaattcgaccgttgggaccctttgctgaaaaattaattaagtttttgattaatgtattcaatgtaacgtttgggctgttgtaatatcaat |
36546154 |
T |
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| Q |
275 |
gattctaccttggacttggaccaagagaatatgacggaatcacatgtgattaaaaatgaatttgttaataacatccctttttgcttatacacttcccttt |
374 |
Q |
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| T |
36546155 |
gattctaccttggacttggaccaagaga--atgacggaatcacatgttattaaaaatgaatttgttaataacatccctttttgcttatacacttcccttt |
36546252 |
T |
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| Q |
375 |
ctatannnnnnnctctaacatacctattttcctattaaaaattaaattatccatttcctgaaaatgttagaatccatagagcatagtgttca |
466 |
Q |
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| T |
36546253 |
ctatatttttttctctaacatacctattttcctattaaaaattaaattatccatttcctgaaaatgttagaatccatagagcatagtgttca |
36546344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 36545930 - 36545962
Alignment:
| Q |
26 |
ataatggtaatggttgaaagaatcaagaatgtg |
58 |
Q |
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| T |
36545930 |
ataatggtaatggttgaaagaatcaagaatgtg |
36545962 |
T |
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