View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_low_14 (Length: 354)
Name: NF18492_low_14
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 42 - 344
Target Start/End: Complemental strand, 191512 - 191210
Alignment:
| Q |
42 |
tgcgggatcactcttccaacaggtgaatggtgtacaaataatgttgttgaagattgaagttttaaagttattttaaggatcttttttgttccaaggaaaa |
141 |
Q |
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| T |
191512 |
tgcgggatcactcttccaacaggtgaatggtgtacaaataatgttgttgaagattgaagttttaaagttattttaaggatcttttttgttccaaggaaaa |
191413 |
T |
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| Q |
142 |
tattgtgcatcctactatgatcgtggatcctaatcctctaggggaagtgcacaagacaagcttattggtgttcattagtaacaaagagatttatcaagct |
241 |
Q |
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| T |
191412 |
tattgtgcatcctactatgatcgtggatcctaatcctctaggggaagtgcacaagacaagcttattggtgttcattagtaacaaagagatttatcaagct |
191313 |
T |
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| Q |
242 |
ctcatgagcatgaagtcctacaaagttccaggtctagatgaattccaaccaatcttttataagatgttttggggggttattggtaataatgtatgctcct |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
191312 |
ctcatgagcatgaagtcctacaaagttccaggtctagatgaattccaaccaatcttttataagatgttttgggaggttattggtaataatgtatgctcct |
191213 |
T |
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| Q |
342 |
ttg |
344 |
Q |
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||| |
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| T |
191212 |
ttg |
191210 |
T |
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