View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_low_15 (Length: 333)
Name: NF18492_low_15
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 36330860 - 36331178
Alignment:
| Q |
1 |
ttgacccatcaacaaaggggataataccaaacaaatccatctcagagctaagattaaatacacaaagtggttatgtttattatattctactagtatataa |
100 |
Q |
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| T |
36330860 |
ttgacccatcaacaaaggggataataccaaacaaatccatctcagagctaagattaaatacacaaagtggttatgtttattatattctactagtatataa |
36330959 |
T |
|
| Q |
101 |
tgttttggttgaaacggtatgagcctaaatattttgtttctatgtgtaacaaaatcaactttatctttctattttttgccaacttcaataagaaagaaaa |
200 |
Q |
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| T |
36330960 |
tgttttggttgaaacggtatgagcctaaatattttgtttctatgtgtaacaaaatcaactttatctttctattttttgccaacttcaataagaaagaaaa |
36331059 |
T |
|
| Q |
201 |
ctcaacttgaactcatactgaatttattgtgttcccatttccaagatcaaaaatgcatgagttgttcattttttactatactttgttttatttgatttct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36331060 |
ctcaacttgaactcatactgaatttattgtgttcccatttccaagatcaaaaatgcatgagttcttcattttttactatactttgttttatttgatttct |
36331159 |
T |
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| Q |
301 |
tacaagtacatatatatag |
319 |
Q |
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||||||||||||||||||| |
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| T |
36331160 |
tacaagtacatatatatag |
36331178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19273751 - 19273826
Alignment:
| Q |
1 |
ttgacccatcaacaaaggg-gataataccaaacaaatccatctcagagctaagattaaatacacaaagtggttatg |
75 |
Q |
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|||||| ||||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
19273751 |
ttgacctatcaacaaaggaagaaaataccaaacaaatccatctcatagctaggattaaatacacaaagtgggtatg |
19273826 |
T |
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