View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18492_low_16 (Length: 329)

Name: NF18492_low_16
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18492_low_16
NF18492_low_16
[»] chr2 (3 HSPs)
chr2 (111-217)||(32958995-32959097)
chr2 (243-314)||(32958890-32958961)
chr2 (20-72)||(32959136-32959188)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 32959097 - 32958995
Alignment:
Q  111 atacagttaagatttaaacagtaactcccttcacatgctattggagacaacaagaatcagatagatagatagaaagagaaggagagagaataaaagcaca 210  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  32959097 atacagttaagatttaaacagtaactctcttcacatgctattggagacaacaagaatcagataga----tagaaagagaaggagagagaataaaagcaca 32959002  T
Q  211 acatagt 217  Q
    |||||||    
T  32959001 acatagt 32958995  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 32958961 - 32958890
Alignment:
Q  243 cctacccagtacccacccttctccataattatacagctgaatggacattttgctgaaagcttttctcacagg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32958961 cctacccagtacccacccttctccataattatacagctgaatggacattttgctgaaagcttttctcacagg 32958890  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 32959188 - 32959136
Alignment:
Q  20 aacctgttccaaaacaaaatacacccaatcataacatagtacaaagaacaaga 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32959188 aacctgttccaaaacaaaatacacccaatcataacatagtacaaagaacaaga 32959136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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