View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_low_25 (Length: 213)
Name: NF18492_low_25
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 25097895 - 25097758
Alignment:
| Q |
15 |
gtgagaagaagaaaacgataaaatggaagaagcggtgttttgattttgcattttagaatggaaaaggaaaaaggttttgaatttgagtgtttggtagtga |
114 |
Q |
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| T |
25097895 |
gtgagaagaagaaaacgataaaatggaagaagcggtgttttg------cattttagaatggaaaaggaaaaaggttttgaatttgagtgtttggtagtga |
25097802 |
T |
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| Q |
115 |
agtggtaacaaccattcaaccacctttcaatgtttgaaacttgt |
158 |
Q |
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| T |
25097801 |
agtggtaacaaccattcaaccacctttcaatgtttgaaacttgt |
25097758 |
T |
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