View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18492_low_3 (Length: 602)

Name: NF18492_low_3
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18492_low_3
NF18492_low_3
[»] chr8 (2 HSPs)
chr8 (1-586)||(32472333-32472897)
chr8 (60-138)||(20086230-20086308)
[»] chr5 (3 HSPs)
chr5 (125-586)||(36758495-36758954)
chr5 (60-152)||(36758402-36758494)
chr5 (59-138)||(3777696-3777775)
[»] scaffold0146 (3 HSPs)
scaffold0146 (241-586)||(24605-24953)
scaffold0146 (96-152)||(32315-32371)
scaffold0146 (101-152)||(29973-30024)
[»] chr1 (6 HSPs)
chr1 (241-586)||(21761607-21761950)
chr1 (261-586)||(37770420-37770741)
chr1 (66-143)||(18981488-18981565)
chr1 (60-107)||(9953148-9953195)
chr1 (103-154)||(37770236-37770287)
chr1 (66-138)||(42486372-42486445)
[»] chr4 (4 HSPs)
chr4 (241-535)||(43035940-43036236)
chr4 (59-192)||(43036423-43036553)
chr4 (449-481)||(44629325-44629357)
chr4 (96-144)||(53897655-53897703)
[»] chr7 (5 HSPs)
chr7 (61-180)||(27866812-27866928)
chr7 (67-144)||(28985278-28985355)
chr7 (96-149)||(47317776-47317829)
chr7 (59-99)||(47317205-47317245)
chr7 (66-137)||(21166378-21166448)
[»] chr3 (3 HSPs)
chr3 (61-148)||(44006395-44006482)
chr3 (64-138)||(37460532-37460606)
chr3 (60-144)||(8262721-8262805)
[»] chr2 (1 HSPs)
chr2 (61-144)||(34456935-34457018)
[»] scaffold0915 (1 HSPs)
scaffold0915 (67-144)||(784-861)


Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 32472333 - 32472897
Alignment:
Q  1 atatgaaatatgtatctacatttttatttattttaggaataggtattcacaaatatttaagaaagttgcttttctgacatcaaaagtttcctaaagacat 100  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||     
T  32472333 atatgaaatatgcatctacatttttatttattttaagaataggtattcataaataattaagaaagttacttttctgacatcaaaagtttcctaaagaca- 32472431  T
Q  101 aagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccgatgacggcagttaactaccgctaaattcatttcttcaatttatgtctc 200  Q
     |||||||||||||| |||| ||||||||||||||||| |||||||||||| | |||||||||||| ||||||| |||||||||||||||||||||||||    
T  32472432 -agtaaaatactaaaatgcctcccgcggtagttaactaccgttgaggacccaacgacggcagttaattaccgctgaattcatttcttcaatttatgtctc 32472530  T
Q  201 tacgtttgccattgccattccactttctccgtcnnnnnnncttcttctccatctttgttgcttttcttcaattcacactacctattgttggcatcaatta 300  Q
    ||||||||||||||||||||||||| ||| |||       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32472531 tacgtttgccattgccattccacttgctctgtctttttttcttcttctccatctttgttgcttttcttcaattcacactacctattgctggcatcaatta 32472630  T
Q  301 tacatcatattttcactacaatactcttgtttcatcaattatacagcttcaccaannnnnnnncctcatcaatcagttgaagaattgccactttctccat 400  Q
    ||||||||||| |||||||||||||||||||||| ||||| |     ||              ||||||||||| |||||||||||||| ||||||||||    
T  32472631 tacatcatattgtcactacaatactcttgtttcaccaatttt-----tt-------------tcctcatcaatctgttgaagaattgcctctttctccat 32472712  T
Q  401 ggccaagcttttcnnnnnnnccttcatatccataaataacggaaacattggacttttgttttgagttcctcttttcatctgcatattgtagcaattcata 500  Q
    |||||||||||||       |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  32472713 ggccaagcttttctttttttccttcatatccataaataacagaaatattggacttttgttttgagttcctcttttcatttgtatgttgtagcaattcata 32472812  T
Q  501 tctccacgttttgacaactaaataacataagtttttgagtaattaatttatgatagtttttcaacaaatcaacaaaagatgaaaaa 586  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32472813 tctccaagttttgacaactaaataacataagtttttgagtaattaatttatgatagtttttcaacaaatcaac-aaagatgaaaaa 32472897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 20086308 - 20086230
Alignment:
Q  60 agaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaacta 138  Q
    ||||||| | |||| |||||||||||||||||| | |||| || ||||||||| || |||| || ||||||||||||||    
T  20086308 agaaagtagtttttttgacatcaaaagtttcctgacgacacaaataaaatacttaaatgcctccagcggtagttaacta 20086230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 240; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 125 - 586
Target Start/End: Original strand, 36758495 - 36758954
Alignment:
Q  125 gcggtagttaactatcgttgaggacccgatgacggcagttaactaccgctaaattcatttcttcaatttatgtctctacgtttgccattgccattccact 224  Q
    |||||||||||||| ||||||||||||     ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36758495 gcggtagttaactaccgttgaggacccag---cggtagttaactaccgctgaattcatttcttcaatttatgtctctacgtttgccagtgccattccact 36758591  T
Q  225 ttctccgtcnnnnnnncttcttctccatctttgttgcttttcttcaattcacactacctattgttggcatcaattatacatcatattttcactacaatac 324  Q
    ||||| |||       |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  36758592 ttctctgtcttcttttcttcttcttcatctttgttgcttttcttcaattcacactacctactattggcatcaattatacatcatattttcactacaatac 36758691  T
Q  325 tcttgtttcatcaattatacagcttcaccaa-nnnnnnnncctcatcaatcagttgaagaattgccactttctccatggccaagcttttcnnnnnnncct 423  Q
    |||||||||| ||||||||||||||||||||         |||||||||||  ||||||||||||| ||||||||||||||||||||||         ||    
T  36758692 tcttgtttcaccaattatacagcttcaccaatttttttttcctcatcaatctcttgaagaattgcctctttctccatggccaagcttttgttttttttct 36758791  T
Q  424 tcatatccataaataacggaaacattggacttttgttttgagttcctcttttcatctgcatattgtagcaattcatat-ctccacgttttgacaactaaa 522  Q
    | |||||||||||||||  ||||||||||||||||||||||||| || ||||||| || || ||| |||||||||||| ||||| |||||||||| ||||    
T  36758792 ttatatccataaataacataaacattggacttttgttttgagtttcttttttcatttgtatgttgcagcaattcatatcctccaagttttgacaagtaaa 36758891  T
Q  523 taacataagtttttgagtaattaatttatgatagtttttcaacaaatcaacaaaagatgaaaaa 586  Q
    |||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  36758892 taacataagttttttagtaattaatttatgattctttttcaacaaatcaac-aaagatgaaaaa 36758954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 36758402 - 36758494
Alignment:
Q  60 agaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccg 152  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||| |||| || |||| ||||||||||||||  ||||||||||||    
T  36758402 agaaagttgcttttctgacatcaaaagtttcctaaagacaagagtaaaatattaaaatgtccccagcggtagttaactactgttgaggacccg 36758494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 3777696 - 3777775
Alignment:
Q  59 aagaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaacta 138  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||| ||||| |  |||||||||||||    
T  3777696 aagaaagttgtgtttctgacatcaaaagttttctaaagacataagtaaaatattaaaatgccctcaacggtagttaacta 3777775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 170; Significance: 6e-91; HSPs: 3)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 241 - 586
Target Start/End: Original strand, 24605 - 24953
Alignment:
Q  241 cttcttctccatctttgttgcttttcttcaattcacactacctattgttggcatcaattatacatcatattttcactacaatactcttgtttcatcaatt 340  Q
    ||||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||| |||||    
T  24605 cttcttctccatctttgttacttttcttcaattcacactacctactgctggcagcaattatacatcatactttcactacaatactcttgtttcaccaatt 24704  T
Q  341 atacagcttcaccaannnnnnnn--cctcatcaatcagttgaagaattgccactttctccatggccaagcttttcnnnnnnnc-cttcatatccataaat 437  Q
    |||||||||||||||          | |||||||||  ||||||||||||| ||||||||||||||||||||||          ||||||||||||||||    
T  24705 atacagcttcaccaaaaaaaaaaatcatcatcaatctattgaagaattgcctctttctccatggccaagcttttgtttttttttcttcatatccataaat 24804  T
Q  438 aacggaaacattggacttttgttttgagttcctcttttcatctgcatattgtagcaattcatatc-tccacgttttgacaactaaataacataagttttt 536  Q
    |||  |||||||||| ||||||||||||||||||||||||| || || ||| ||||||  ||||| |||| ||||||| || ||||||||||||||||||    
T  24805 aacataaacattggaattttgttttgagttcctcttttcatttgtatgttgcagcaataaatatcctccaagttttgataagtaaataacataagttttt 24904  T
Q  537 gagtaattaatttatgatagtttttcaacaaatcaacaaaagatgaaaaa 586  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  24905 gagtaattaatttatgattgtttttcaacaaatcaac-aaagatgaaaaa 24953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 32371 - 32315
Alignment:
Q  96 gacataagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccg 152  Q
    |||| |||||||||||| || ||||||| |||||||||||||| |||||||||||||    
T  32371 gacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgaggacccg 32315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 30024 - 29973
Alignment:
Q  101 aagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccg 152  Q
    |||||||||||| || ||||||  |||||||||||||| |||||||||||||    
T  30024 aagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccg 29973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 241 - 586
Target Start/End: Complemental strand, 21761950 - 21761607
Alignment:
Q  241 cttcttctccatctttgttgcttttcttcaattcacactacctattgttggcatcaattatacatcatattttcactacaatactcttgtttcatcaatt 340  Q
    ||||||||||||||||||| ||| |||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  21761950 cttcttctccatctttgtttcttctcttcaattcacactaccaactgttagcatcaattatacatcatactttcactacaatactcttgtttcaccaatt 21761851  T
Q  341 atacagcttcaccaannnnnnnncctcatcaatcagttgaagaattgccactttctccatggccaagcttttcnnnnnnnc-cttcatatccataaataa 439  Q
    ||||||||| || ||        |||||||   | |||||||||||||| ||||||||||||||||||||||          ||||||||||||||||||    
T  21761850 atacagctttacgaattttttttcctcatc---ctgttgaagaattgcctctttctccatggccaagcttttgattttttttcttcatatccataaataa 21761754  T
Q  440 cggaaacattggacttttgttttgagttcctcttttcatctgcatattgtagcaattcatatc-tccacgttttgacaactaaataacataagtttttga 538  Q
    | |||||||| |||||||||||||| |||||||||| || || || ||| | ||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  21761753 cagaaacattcgacttttgttttgaattcctctttttatttgtatgttgcaacaattcatatcctccaagttttgacaagtaaataacataagtttttga 21761654  T
Q  539 gtaattaatttatgatagtttttcaacaaatcaacaaaagatgaaaaa 586  Q
    || ||||||||||||| |||||||||||||||||| ||||||||||||    
T  21761653 gtgattaatttatgattgtttttcaacaaatcaac-aaagatgaaaaa 21761607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 261 - 586
Target Start/End: Complemental strand, 37770741 - 37770420
Alignment:
Q  261 cttttcttcaattcacactacctattgttggcatcaattatacatcatattttcactacaatactcttgtttcatcaattatacagcttcaccaannnnn 360  Q
    ||||||||||||||||||||||||  | || |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||         
T  37770741 cttttcttcaattcacactacctaccgctgacatcaattatacatcatactttcactacaatactcttgtttcaccaattatacagcttcaccaattttt 37770642  T
Q  361 nnncctcatcaatcagttgaagaattgccactttctccatggccaagc-----ttttcnnnnnnnccttcatatccataaataacggaaacattggactt 455  Q
       ||||||||||| | |||||| ||||| |||  |||||| ||||||     ||||         |||||||| |||||||||  ||||||||||||||    
T  37770641 tttcctcatcaatctgatgaagagttgcctctt--tccatgaccaagcttttgtttttttttttttcttcatat-cataaataatagaaacattggactt 37770545  T
Q  456 ttgttttgagttcctcttttcatctgcatattgtagcaattcatatctccacgttttgacaactaaataacataagtttttgagtaattaatttatgata 555  Q
    ||||||||||||||||||||||| || || ||| ||||||||||||     |  |||||||| |||||||||||||||||||| |||||||||||||||     
T  37770544 ttgttttgagttcctcttttcatttgtatgttgcagcaattcatat-----caatttgacaagtaaataacataagtttttgaataattaatttatgatt 37770450  T
Q  556 gtttttcaacaaatcaacaaaagatgaaaaa 586  Q
    |||||||||||||||||| ||||||||||||    
T  37770449 gtttttcaacaaatcaac-aaagatgaaaaa 37770420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 18981488 - 18981565
Alignment:
Q  66 ttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgtt 143  Q
    |||||||| |||||| ||||  |||||||||||| |||||||||||| || || |||| ||| |||||||||| ||||    
T  18981488 ttgcttttttgacataaaaaacttcctaaagacacaagtaaaatacttaaatgtccccagcgatagttaactaccgtt 18981565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 9953148 - 9953195
Alignment:
Q  60 agaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaa 107  Q
    |||||||||||||| ||||||||||| ||||||||| ||| |||||||    
T  9953148 agaaagttgcttttttgacatcaaaaatttcctaaaaacacaagtaaa 9953195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 37770236 - 37770287
Alignment:
Q  103 gtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccgat 154  Q
    |||||||||| || |||||||  ||||||||||||||||||||||| |||||    
T  37770236 gtaaaatacttaaatgcccccaacggtagttaactatcgttgaggatccgat 37770287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 42486372 - 42486445
Alignment:
Q  66 ttgcttttctgacatca-aaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaacta 138  Q
    |||||||| | |||||| ||| ||||||||| ||| ||||||||||||||| | || || ||||||||||||||    
T  42486372 ttgcttttttaacatcataaactttcctaaaaacacaagtaaaatactaaaatacctcctgcggtagttaacta 42486445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 241 - 535
Target Start/End: Original strand, 43035940 - 43036236
Alignment:
Q  241 cttcttctccatctttgttgcttttcttcaattcacactacctattgttggcatcaattatacatcatattttcactacaatactcttgtttcatcaatt 340  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  43035940 cttcttctacatctttgttgcttttcttcaattcacactacctactgctggcatcaattatacatcatactttcaccacaatactcttgtttcaccaatt 43036039  T
Q  341 atacagcttcaccaannnnnnnncctcatcaatcagttgaagaattgccactttctccatggccaagc-ttttcnnnnnnnccttcatatccataaataa 439  Q
    |||||||||||||||        |||||| |||  |||||||||||||| |||||||||||||||||| ||||         ||||||||||||||||||    
T  43036040 atacagcttcaccaattttttttcctcattaatttgttgaagaattgcctctttctccatggccaagcttttttttttttttcttcatatccataaataa 43036139  T
Q  440 cggaaacattggacttttgttttgagttcctcttttcatctgcatattgtagcaattcatat-ctccacgttttgacaactaaataacataagtttt 535  Q
    | |||||||||||||||||||||||||||| |||||||| || || ||| ||||||| |||| ||||| |||||||||| |||||||||||||||||    
T  43036140 cagaaacattggacttttgttttgagttccccttttcatttgtatgttgaagcaattaatatcctccaagttttgacaagtaaataacataagtttt 43036236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 43036553 - 43036423
Alignment:
Q  59 aagaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccgatgacg 158  Q
    |||||| |||||||| |||||| ||||  |||  || |||| |||||||||||| || ||||||  |||||||||||||| |||||||||||||    |     
T  43036553 aagaaaattgcttttttgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccgg---ca 43036457  T
Q  159 gcagttaactaccgctaaattcatttcttcaatt 192  Q
    |||||||||||||||| || || |||||||||||    
T  43036456 gcagttaactaccgctgaaatcttttcttcaatt 43036423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 481
Target Start/End: Complemental strand, 44629357 - 44629325
Alignment:
Q  449 tggacttttgttttgagttcctcttttcatctg 481  Q
    |||||||||||||||||||||||||||||||||    
T  44629357 tggacttttgttttgagttcctcttttcatctg 44629325  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 53897703 - 53897655
Alignment:
Q  96 gacataagtaaaatactaaattgccccccgcggtagttaactatcgttg 144  Q
    |||| ||||||  |||||||| |||||| ||||||||||||||||||||    
T  53897703 gacacaagtaatttactaaatagcccccagcggtagttaactatcgttg 53897655  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 27866812 - 27866928
Alignment:
Q  61 gaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccgatgacggc 160  Q
    ||||||||||||||||| ||||||||| ||||||| ||| |||||||||| | || ||||| | |||||||||||||| |||||| ||||||    | ||    
T  27866812 gaaagttgcttttctgaaatcaaaagtctcctaaaaacacaagtaaaatatttaaatgccctcagcggtagttaactaccgttgaagacccgg---cagc 27866908  T
Q  161 agttaactaccgctaaattc 180  Q
    |||||||||||||| |||||    
T  27866909 agttaactaccgctgaattc 27866928  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 28985355 - 28985278
Alignment:
Q  67 tgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttg 144  Q
    |||| |||||||||||||||||||||||| ||| |||||||  || ||||| |||||  |||||||||| || |||||    
T  28985355 tgctgttctgacatcaaaagtttcctaaaaacacaagtaaatgacgaaattacccccaacggtagttaagtaccgttg 28985278  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 47317829 - 47317776
Alignment:
Q  96 gacataagtaaaatactaaattgccccccgcggtagttaactatcgttgaggac 149  Q
    |||| |||||||||||| || ||||||| |||||||||||||| ||||||||||    
T  47317829 gacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgaggac 47317776  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 47317205 - 47317245
Alignment:
Q  59 aagaaagttgcttttctgacatcaaaagtttcctaaagaca 99  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  47317205 aagaaagttgcttttttgacatcaaaagtttcctaacgaca 47317245  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 21166378 - 21166448
Alignment:
Q  66 ttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaact 137  Q
    ||||||||||||| |||| | || |||||| ||| ||||||||||||||| | ||||| |||||||||||||    
T  21166378 ttgcttttctgacttcaatactt-cctaaaaacacaagtaaaatactaaaatacccccagcggtagttaact 21166448  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 44006395 - 44006482
Alignment:
Q  61 gaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttgagga 148  Q
    |||| |||||||||||||||  ||| ||||  || ||||||||||||||||| || ||||||| |||||||||||||| |||| ||||    
T  44006395 gaaaattgcttttctgacattgaaaatttcacaatgacataagtaaaatacttaaatgcccccagcggtagttaactaccgttcagga 44006482  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 37460606 - 37460532
Alignment:
Q  64 agttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaacta 138  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||  || ||||| || || ||||||||||||||    
T  37460606 agttgcttttctgacatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccagcggtagttaacta 37460532  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 8262721 - 8262805
Alignment:
Q  60 agaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttg 144  Q
    ||||| |||| ||| |||||| ||||  ||| |||||||| |||||||||| |  ||||||||   |||||||||||||||||||    
T  8262721 agaaaattgcatttttgacataaaaaacttcataaagacacaagtaaaataatttattgcccctaacggtagttaactatcgttg 8262805  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 34456935 - 34457018
Alignment:
Q  61 gaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttg 144  Q
    |||| |||||||| |||||| ||||  ||  |||||||| |||||||||||| || ||||| | ||||||||||||||||||||    
T  34456935 gaaaattgcttttttgacataaaaaactttataaagacacaagtaaaatacttaaatgccctcagcggtagttaactatcgttg 34457018  T

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Target: scaffold0915 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0915
Description:

Target: scaffold0915; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 861 - 784
Alignment:
Q  67 tgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttg 144  Q
    |||| |||||||||||||||||||||||| ||| |||||||  || ||||| |||||  |||||||||| || |||||    
T  861 tgctgttctgacatcaaaagtttcctaaaaacacaagtaaatgacgaaattacccccaacggtagttaagtaccgttg 784  T

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