View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18492_low_7 (Length: 497)
Name: NF18492_low_7
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_low_7 |
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| [»] scaffold0438 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 52188039 - 52188529
Alignment:
| Q |
1 |
tttctacttcccacgatgtctctggttataataacttagtttcaggggatacattacaaaacccttttagtgcaacaaatgtttgtgtgcaatg----ca |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52188039 |
tttctacttcccacgatgtctctggttataataacttagtttcaggggatacattacaaaacccttttagtgcaacaaatgtttgtgtgcaatgtatgca |
52188138 |
T |
|
| Q |
97 |
gttgacgtgtgcatcttgaatcacttgtacaactagtttgaattaacttctagctcatagaatattcacaactgatatgaacttgagttgctacttgtgn |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52188139 |
gttgacgtgtgcatcttgaatcacttgtacaactagtttgaattaacttctagctcatagaatattcacaactgatatgaacttgagttgctacttgtga |
52188238 |
T |
|
| Q |
197 |
nnnnnncttgattgtacatcttaaatcacatgttggaccagtaattttagtcattcacttcatagaagcttcactgatactaatttacaaaaaaaagtcg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52188239 |
aaaaaacttgattgtacatcttaaatcacatgttggaccagtaattttagtcattcacttcataggagcttcactgatactaatttacaaaaaaaagtcg |
52188338 |
T |
|
| Q |
297 |
taataagtttataagtattaagtagattccttcnnnnnnnnnnnnnngtatcaagtagattgttcaatcatgtattttttaaaatttaattttaggcaca |
396 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52188339 |
taataagtttataagtattaagtagattccttcaaaaaaaaaaaaaagtattaagtagattgttcaatcatgtattttttaaaatttaattttaggcaca |
52188438 |
T |
|
| Q |
397 |
tgcagacttagatatttgagtatcatattttaagtagattgtttgatacctttgttctattttacacctgtctttttatttcatgcctttg |
487 |
Q |
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| T |
52188439 |
tgcagacttagatatttgagtatcatattttaagtagattgtttgatacctttgttctattttacacctgtctttttatttcatgcctttg |
52188529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 38990298 - 38990538
Alignment:
| Q |
8 |
ttcccacgatgtctctggttataataacttagtttcaggggatacattacaaaaccct--tttagtgcaacaaatgtttgtgtgcaatgca-----gttg |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||| | |||| |
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| T |
38990298 |
ttcccacgatgtctctggttataataactttatttcagagaatacattacaaaacccttatttagtgcaacaaatgtttgtgtacaatgtatgcatgttg |
38990397 |
T |
|
| Q |
101 |
acgtgtgcatcttgaatcacttgtacaactagtttgaattaacttctagctcatagaatatt-----cacaactgatatgaacttgagttgctacttgtg |
195 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| || |||||||||||||||||||| ||||| |
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| T |
38990398 |
acttgtgcatcttgaatcacttgtacaactagtttgaattaacttctagtttatagaatattgactacactacagatatgaacttgagttgctagttgtg |
38990497 |
T |
|
| Q |
196 |
nnnnnnncttgattgtacatcttaaatcacatgttggacca |
236 |
Q |
| |
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| T |
38990498 |
aaaaaaacttgattgtacatcttgaatcatatgttggacca |
38990538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 27700330 - 27700269
Alignment:
| Q |
103 |
gtgtgcatcttgaatcacttgtacaactagtttgaattaacttctagctcatagaatattca |
164 |
Q |
| |
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|||||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||||| |
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| T |
27700330 |
gtgtgcatcttgaatcacatgtactactagtctggattaacttctagctcatagaatattca |
27700269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 26292294 - 26292334
Alignment:
| Q |
97 |
gttgacgtgtgcatcttgaatcacttgtacaactagtttga |
137 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||| |
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| T |
26292294 |
gttgacatgtgcatcttgaatcacatgtacaactagtttga |
26292334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 26305551 - 26305591
Alignment:
| Q |
97 |
gttgacgtgtgcatcttgaatcacttgtacaactagtttga |
137 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||||| |
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| T |
26305551 |
gttgacatgtgcatcttgaatcacatgtacaactagtttga |
26305591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 26338906 - 26338946
Alignment:
| Q |
97 |
gttgacgtgtgcatcttgaatcacttgtacaactagtttga |
137 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||||| |
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| T |
26338906 |
gttgacatgtgcatcttgaatcacatgtacaactagtttga |
26338946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 5359964 - 5359902
Alignment:
| Q |
103 |
gtgtgcatcttgaatcacttgtacaactagtttgaattaacttctagctcatagaatattcac |
165 |
Q |
| |
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||||||| |||||||||| ||||||||| |||||||||||||||||||||||| || ||||| |
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| T |
5359964 |
gtgtgcaccttgaatcacacgtacaactaatttgaattaacttctagctcataggattttcac |
5359902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 13483173 - 13483214
Alignment:
| Q |
110 |
tcttgaatcacttgtacaactagtttgaattaacttctagct |
151 |
Q |
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||||||||||| |||| ||||||||||||||||||| ||||| |
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| T |
13483173 |
tcttgaatcacatgtaaaactagtttgaattaacttatagct |
13483214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 6676 - 6716
Alignment:
| Q |
97 |
gttgacgtgtgcatcttgaatcacttgtacaactagtttga |
137 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||||| |
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| T |
6676 |
gttgacatgtgcatcttgaatcacatgtacaactagtttga |
6716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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