View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18492_low_8 (Length: 487)
Name: NF18492_low_8
Description: NF18492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18492_low_8 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 31562113 - 31562578
Alignment:
| Q |
18 |
acaagaaggtactgtaaattatcttattattactatttatcttagaactataaacaaattagaaaccattatcttttaatcaaagtaatggctctannnn |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31562113 |
acaagaaggtactgtaaattatcttattattactaattatcttagaactataaacaaattagaaacaattatcttttaatcaaagtaatggctctatttt |
31562212 |
T |
|
| Q |
118 |
nnnnnnnnnnnnatgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
31562213 |
tgtttgttttttatgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatagattttggagcgttcccga |
31562312 |
T |
|
| Q |
212 |
atcttgagtggctaagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31562313 |
atcttgagtggctaagtttggaagaatgtataaaccttgtggagttggatccatctattggacttctagaaaagctttcttacttgaatttagacggctg |
31562412 |
T |
|
| Q |
312 |
ctatagtctggaaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgtttgatgatccaatgcat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31562413 |
ctatagtctggaaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgtttgatgatccaatgcat |
31562512 |
T |
|
| Q |
412 |
ttgaagaagcctgatataagtgaaagtgcatcacaagattcaacagacacatacttgttgcctttg |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31562513 |
ttgaagaagcctgatataagtgaaagtgcatcacaagattcaacagacacatacttgttgcctttg |
31562578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 33305266 - 33304829
Alignment:
| Q |
18 |
acaagaaggtactgtaaattatcttattattactatttatcttagaactataaacaaattagaaaccattatcttttaatcaaagtaatggctctannnn |
117 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| | |||||||||||| |||||||||| | ||||| ||||||| || |||||||||| | | || |
|
|
| T |
33305266 |
acaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtatttt |
33305167 |
T |
|
| Q |
118 |
nnnnnnnnnnnnatgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccga |
211 |
Q |
| |
|
||||| |||||||| |||||||| | | | ||||||||||| |||||| || | || ||||||||| ||| | |||||||||| |
|
|
| T |
33305166 |
tgtttgttttacatgtcccagtatctgcccaatttgaaacatttggatctaagacactccttagaactagtaaagatactagattttggggagttcccga |
33305067 |
T |
|
| Q |
212 |
atcttgagtggctaagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctg |
311 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| | | || |
|
|
| T |
33305066 |
atcttgagaagctaaatttggaaggatgtataaaccttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatttatatgaatg |
33304967 |
T |
|
| Q |
312 |
ctatagtctggaaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgtttgatgatccaatgcat |
411 |
Q |
| |
|
| | | ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||| |
|
|
| T |
33304966 |
caaaaatctagtaagcatacccaataacatattcagtcttagctctcttgaagatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcat |
33304867 |
T |
|
| Q |
412 |
ttgaa---gaagcctgatataagtgaaagtgcatcaca |
446 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
33304866 |
ttgaagaagaagcatgatataagtgaaagtgcatcaca |
33304829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 33263420 - 33263033
Alignment:
| Q |
18 |
acaagaaggtactgtaaattatcttattattactatttatc---ttagaactataaacaaattagaaaccattatcttttaatcaaagtaatggctctan |
114 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |||| ||| |||||| ||||| |||||| ||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
33263420 |
acaagaaggtactataaattctcttattattaatattcatcatcttagaaatataaccaaattcgaaacaattctcttataatcaaagtaatggctctat |
33263321 |
T |
|
| Q |
115 |
nnnnnnnnnnnnnnnatgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcc |
208 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||||||||||| | || | ||||||||||| ||||||||| |
|
|
| T |
33263320 |
ttttattgtttattcatgtcacagtatctgcccaatttgagaacattggatctaagtcactccatcgagctagaaaagataatagattttggagagttcc |
33263221 |
T |
|
| Q |
209 |
cgaatcttgagtggctaagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacgg |
308 |
Q |
| |
|
| |||||||||||| ||| |||||||| ||||| ||| ||||| ||| ||||||||||||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
33263220 |
caaatcttgagtggttaaatttggaaggatgtacaaatcttgttgagttggatccatctattggacttctaagaaatcttgtttacttgaatttagaaaa |
33263121 |
T |
|
| Q |
309 |
ctgctatagtctggaaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgttt |
396 |
Q |
| |
|
||||||| || | ||||||||| |||| ||||||| |||| |||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
33263120 |
ttgctataaccttgtaagcataccgaacaccatattcggtctgggctctcttgaagatctaaatatcagttgctgttccaaagtgttt |
33263033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 132 - 392
Target Start/End: Complemental strand, 33058231 - 33057965
Alignment:
| Q |
132 |
gtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccgaatcttgagtggcta |
225 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| ||||||||| |||||| | ||||||||||| |||||||||||||||||||| | || |
|
|
| T |
33058231 |
gtcacagtatcttcccaatttgagaacattggatctacgtcactccagaaatctagaaaagataatagattttggagagttcccgaatcttgagcgttta |
33058132 |
T |
|
| Q |
226 |
agtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctggaaa |
325 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||| || | | ||| | ||||| | | |
|
|
| T |
33058131 |
gatttggaaggatgtataaaccttgttgagttggatccatctattggacttctaagaaagcttgtttacttgaacctaaaagattgcaaaagtctagtta |
33058032 |
T |
|
| Q |
326 |
gcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagt |
392 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || | ||||||||| |||||||||||||||| |
|
|
| T |
33058031 |
gcatacccaacaacatattcggtcttagctctcttcaatacctaaatatgtgtggctgttccaaagt |
33057965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 136 - 420
Target Start/End: Complemental strand, 33272468 - 33272178
Alignment:
| Q |
136 |
cagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccgaatcttgagtggctaagtt |
229 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||| |||||| ||| || ||||||| ||| ||||||||||||||||||||||| ||| || |
|
|
| T |
33272468 |
cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactattaaagattgtagattttggagagttcccgaatcttgagtggttaaatt |
33272369 |
T |
|
| Q |
230 |
tggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctggaaagcat |
329 |
Q |
| |
|
|||||| |||| ||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| | ||| | | ||| | |||||| |
|
|
| T |
33272368 |
tggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatttaaaaaattgcaaaaatctagtaagcat |
33272269 |
T |
|
| Q |
330 |
acccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgtttgatgatccaatgcatttgaagaag |
420 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
33272268 |
acccaacaacatatttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaatccaatgcatttgaagaag |
33272178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 138 - 396
Target Start/End: Original strand, 28869610 - 28869873
Alignment:
| Q |
138 |
gtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccgaatcttgagtggctaagtttg |
231 |
Q |
| |
|
||||||||||||||| |||| |||| ||||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||| ||||| ||| |
|
|
| T |
28869610 |
gtatcttcccaatttgagaacattgcatctaagtcactccagcaatctagaaaagataatagattttggagagttcccaaatcttgagaagctaaagttg |
28869709 |
T |
|
| Q |
232 |
gaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctggaaagcatac |
331 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||| | | | ||| || |
|
|
| T |
28869710 |
aaagagtgtataaaccttgttgagttggatccatctattggacttctaagaaagcttgtatacttgaatttaaacggttgctataatatagtaagtgta- |
28869808 |
T |
|
| Q |
332 |
ccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgttt |
396 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28869809 |
ccaacaacatattcggtcttaactctcttgaagatctaaatatgtctggctgttccaaagtgttt |
28869873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 136 - 396
Target Start/End: Complemental strand, 33388734 - 33388468
Alignment:
| Q |
136 |
cagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccgaatcttgagtggctaagtt |
229 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| ||||||| |||||| | ||||||| ||| ||||||||||||||||||||||| ||| || |
|
|
| T |
33388734 |
cagtatcttcccaatttgagaagattggatctaagacactccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatt |
33388635 |
T |
|
| Q |
230 |
tggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctggaaagcat |
329 |
Q |
| |
|
||||| |||| |||||||| ||| | ||||||||||||||||||||| ||||||| |||||||||||| || || ||| | ||| | |||||| |
|
|
| T |
33388634 |
tggaattatgtgcgaaccttgttgagttagatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcat |
33388535 |
T |
|
| Q |
330 |
acccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgttt |
396 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| |||| |||||||||| |||| |
|
|
| T |
33388534 |
acccaacaacatatccggtcttagctctcttgaagatctaaatatatgtggttgttccaaagcgttt |
33388468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 130 - 396
Target Start/End: Original strand, 33644004 - 33644276
Alignment:
| Q |
130 |
atgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccgaatcttgagtggc |
223 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||||| ||||| | || | ||| || | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33644004 |
atgtcacagtatcttcccaatctgagaagattggatttaagtgattctagaaagctagaaaagataatagattttggagagttcccgaatcttgagtggt |
33644103 |
T |
|
| Q |
224 |
taagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctgga |
323 |
Q |
| |
|
||| |||||||| ||| |||||||||||||| ||||| ||||||||||||| || ||||||| |||||||||| || | | || | | ||||| |
|
|
| T |
33644104 |
taaatttggaaggatgcgtaaaccttgtggagttggatttatctattggacttttaagaaagcttgtttacttgaatgtaaaagattgtgaaaatctggt |
33644203 |
T |
|
| Q |
324 |
aagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgttt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||| |
|
|
| T |
33644204 |
aagcatacccaacaacatattcagtcttagctctcttcaagatctaaatttgggtggttgttccaaagtgttt |
33644276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 130 - 398
Target Start/End: Complemental strand, 33359388 - 33359116
Alignment:
| Q |
130 |
atgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatagga----gagttcccgaatcttgagtggcta |
225 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||| |||||| | | || | |||||||| || ||||||||||||||||| |||| |
|
|
| T |
33359388 |
atgtcacagtatcttcccaatttgagaacattggatctaagtaactccaaagagctagaaaagataacagattttggagttcccgaatcttgaaaagcta |
33359289 |
T |
|
| Q |
226 |
agtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctggaaa |
325 |
Q |
| |
|
| |||| ||| |||| |||| ||||||||| ||||||||||| ||||||||||| |||||||| ||||||||| ||| | | | | | | ||| | || |
|
|
| T |
33359288 |
aatttgaaaggatgtgtaaaacttgtggagttggatccatctcttggacttctaaaaaagcttgtttacttgaacttaaaagattacaaaaatctagtaa |
33359189 |
T |
|
| Q |
326 |
gcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgtttga |
398 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||| | || ||||||||||||||||| |
|
|
| T |
33359188 |
gcatacccaacaacatatttggtcttagctctcttgaagatcaaaatatgtgcggttgttccaaagtgtttga |
33359116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 199 - 429
Target Start/End: Complemental strand, 9167368 - 9167138
Alignment:
| Q |
199 |
ggagagttcccgaatcttgagtggctaagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttga |
298 |
Q |
| |
|
|||| ||| ||||||||||||||| || |||||||| |||| |||| ||||||||| ||||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
9167368 |
ggagggtttccgaatcttgagtggttagatttggaaggatgtgtaaaacttgtggagttggatccatctcttggacttctaagaaagcttgtttacttga |
9167269 |
T |
|
| Q |
299 |
atttagacggctgctatagtctggaaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgtttga |
398 |
Q |
| |
|
|| || | | || | ||| ||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
9167268 |
atgtaaaagattgtggaaatctaataagaatacccaacaacatattcggtcttagctctcttaaagatctaaatatgtgtggctgttccaaattgtttga |
9167169 |
T |
|
| Q |
399 |
tgatccaatgcatttgaagaagcctgatata |
429 |
Q |
| |
|
||| ||| |||||||||||||||||||||| |
|
|
| T |
9167168 |
cgattcaaggcatttgaagaagcctgatata |
9167138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 446
Target Start/End: Complemental strand, 33286326 - 33285894
Alignment:
| Q |
20 |
aagaaggtactgtaaattatcttattattactatttatcttagaactataaacaaattagaaaccattatcttttaatcaaagtaatggctctannnnnn |
119 |
Q |
| |
|
||||||||||| |||||||||||||||| | | || ||||||||| |||||||||||| ||||| ||| |||| ||||||| ||||||||| | |
|
|
| T |
33286326 |
aagaaggtactataaattatcttattataaatgttcatcttagaaatataaacaaatttgaaacaattctcttaaaatcaaattaatggctccatttttg |
33286227 |
T |
|
| Q |
120 |
nnnnnnnnnnatgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccgaat |
213 |
Q |
| |
|
|| | |||||||||||||||||| || |||||||||| | |||||| ||| || ||||||||| ||| |||||||||||||| |
|
|
| T |
33286226 |
tttgtttttcatattacagtatcttcccaatttgaggggattggatctacgatactccaaaaaactagtaaagatagtagatttcggagagttcccgaat |
33286127 |
T |
|
| Q |
214 |
cttgagtggctaagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgct |
313 |
Q |
| |
|
||||||||| ||| |||||||| |||||| | |||| ||||| ||||||||||||||||||||||| ||| ||| ||||||||||||| | | ||| |
|
|
| T |
33286126 |
cttgagtggttaaatttggaaggatgtatcagccttttggagttggatccatctattggacttctaagaaaccttgtttacttgaatttaaaagattgca |
33286027 |
T |
|
| Q |
314 |
atagtctggaaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgtttgatgatccaatgcattt |
413 |
Q |
| |
|
| | ||| | |||||||||||||||||||||| |||| ||||||||| || ||||| ||||| | |||| ||||| |||| ||| || | |||| |
|
|
| T |
33286026 |
aaaatcttgtaagcatacccaacaacatattcggtctaagctctcttaaatatctatatatgtggaactgtcacaaagcgtttaccaatcaaagggattt |
33285927 |
T |
|
| Q |
414 |
gaagaagcctgatataagtgaaagtgcatcaca |
446 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |
|
|
| T |
33285926 |
gaagaacccggatataagtgaaagtgcatcaca |
33285894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 130 - 396
Target Start/End: Complemental strand, 33410630 - 33410361
Alignment:
| Q |
130 |
atgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccgaatcttgagtggc |
223 |
Q |
| |
|
|||||||||||| |||||||||| | | ||||||||||||| |||||| || | | ||||||||||| ||||||||||||||||||||| | |
|
|
| T |
33410630 |
atgtcacagtattttcccaatttgaaagcattggatctaagtgactccaaaa---tagaaaagataatagattttggagagttcccgaatcttgagtcgt |
33410534 |
T |
|
| Q |
224 |
taagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctgga |
323 |
Q |
| |
|
||| ||||||| |||| ||| ||||||||| ||||| |||| |||||||||||| ||||||| |||||||||||| ||| ||| | | | | |
|
|
| T |
33410533 |
taaatttggaaagatgtgaaaaacttgtggagttggattcatcgattggacttctaagaaagcttgtttacttgaatttggactattgcataaatttagt |
33410434 |
T |
|
| Q |
324 |
aagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgttt |
396 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
33410433 |
aagcatacccaacagcatattctgtcttagctctcttgaagatctatatatgtgtggctgttccaaagtgttt |
33410361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 228 - 396
Target Start/End: Complemental strand, 33399521 - 33399353
Alignment:
| Q |
228 |
tttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctggaaagc |
327 |
Q |
| |
|
||||| || ||||| ||| ||||||||| ||||||||||||||||||||||| ||||||| || ||||||| || | | || | | ||||| |||| |
|
|
| T |
33399521 |
tttgggaggatgtaaaaaacttgtggagttggatccatctattggacttctaagaaagcttgtttgcttgaatgtaaaagattgtgaaaatctggtaagc |
33399422 |
T |
|
| Q |
328 |
atacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgttt |
396 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
33399421 |
atacccaacaacatattcgatcttagctctcttgaatatctaaatatgaatggctgttccaaagtgttt |
33399353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 130 - 302
Target Start/End: Complemental strand, 33399697 - 33399519
Alignment:
| Q |
130 |
atgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccgaatcttgagtggc |
223 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| || |||||||| | ||||||||||| |||||||||| |||||||||||| |
|
|
| T |
33399697 |
atgtcacagtatcttcgcaatttgcgaaaattggatctaatgggttcaataaatctagaaaagataatagattttggagagttcccaaatcttgagtggt |
33399598 |
T |
|
| Q |
224 |
taagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaattt |
302 |
Q |
| |
|
|| ||||||| ||||| |||||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
33399597 |
tagatttggaattatgtaagaaccttgttgagttggatccatctattggacttctaagaaagcttgtttacttgaattt |
33399519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 9167549 - 9167454
Alignment:
| Q |
18 |
acaagaaggtactgtaaattatcttattattactatttatcttagaactataaacaaattagaaaccattatcttttaatcaaagtaatggctcta |
113 |
Q |
| |
|
|||| |||||||| |||| | |||||||||||| ||||| |||||| |||||||||||| ||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
9167549 |
acaaaaaggtactataaactctcttattattaccgtttattttagaaatataaacaaattcgaaacaattttcttacaatcaaagtaatggctcta |
9167454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 33058346 - 33058251
Alignment:
| Q |
18 |
acaagaaggtactgtaaattatcttattattactatttatc---ttagaactataaacaaattagaaaccattatcttttaatcaaagtaatggct |
110 |
Q |
| |
|
||||||||||||| |||||| | ||||||||| |||||||| |||||| |||||||||||| |||| ||| |||| |||||||||||||||| |
|
|
| T |
33058346 |
acaagaaggtactataaattctattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaatggct |
33058251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 33359498 - 33359409
Alignment:
| Q |
18 |
acaagaaggtactgtaaattatcttattattactatttatcttagaactataaacaaattagaaaccattatcttttaatcaaagtaatg |
107 |
Q |
| |
|
||||||||||| | |||||| ||||||||||| | ||||| |||||| ||||||| |||| ||| |||||||||||||||||| |||| |
|
|
| T |
33359498 |
acaagaaggtaatataaattctcttattattaatgtttattttagaaatataaaccaattgaaaataattatcttttaatcaaagcaatg |
33359409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 33272560 - 33272489
Alignment:
| Q |
42 |
tattattactatttatcttagaactataaacaaattagaaaccattatcttttaatcaaagtaatggctcta |
113 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||||| ||||| ||| |||| |||||| ||||||| |||| |
|
|
| T |
33272560 |
tattattaatgtttatcttagaaatataaacaaatttgaaacaattctcttagaatcaatgtaatggttcta |
33272489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 33399771 - 33399715
Alignment:
| Q |
56 |
atcttagaactataaacaaattagaaaccattatcttttaatcaaagtaatggctct |
112 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||| | || |||||||||||||| |||| |
|
|
| T |
33399771 |
atcttagaaatataaacaaattcgaaacaattcttttataatcaaagtaatgtctct |
33399715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 17440127 - 17440548
Alignment:
| Q |
18 |
acaagaaggtactgtaaattatcttatta-ttactatttatcttagaactataaacaaattagaaaccattatcttttaatcaaagtaatggctctannn |
116 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||| | |||||||| ||| |||||||||||| ||||| ||| |||| ||||||| |||||||||||| |
|
|
| T |
17440127 |
acaagaaggtaccataaattctcttattaattaatgtttatctttgaaatataaacaaattcgaaacaattttcttataatcaatgtaatggctctattt |
17440226 |
T |
|
| Q |
117 |
nnnnnnnnnnnnnatgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccg |
210 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||| |||| | ||| || | ||||||||| | |||||||||| |
|
|
| T |
17440227 |
tttttt-------atgtcacagtatcttcccaatttgagaagattggatctaagtgactctagaaagctagaaaagataatggattttggagagttccca |
17440319 |
T |
|
| Q |
211 |
aatcttgagtggctaagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggct |
310 |
Q |
| |
|
|||||||||||| ||| |||||||| |||| || |||||||| |||||||||| |||||||||||| ||||||| ||||||||| ||| | | | |
|
|
| T |
17440320 |
aatcttgagtggttaaatttggaaggatgtgaaagacttgtggaattggatccatcaattggacttctaagaaagcttgtttacttgaacttaaaagatt |
17440419 |
T |
|
| Q |
311 |
gctatagtctggaaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgtttgatgatccaatgca |
410 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||| |||||||||| || ||| ||| |
|
|
| T |
17440420 |
gctataatctagtaagcatacccaacaacatattctgtcttagctctcttgaatatctaaatatgcgatgttgtttcaaagtgtttacaaattcaaggca |
17440519 |
T |
|
| Q |
411 |
tttgaagaagcctgatataagtgaaagtg |
439 |
Q |
| |
|
||||| || ||||| |||||||||||||| |
|
|
| T |
17440520 |
tttgacgacgcctggtataagtgaaagtg |
17440548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 130 - 390
Target Start/End: Complemental strand, 1323 - 1057
Alignment:
| Q |
130 |
atgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccgaatcttgagtggc |
223 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||||||| |||||| || || | ||||||| || || |||| || |||||||||||| |
|
|
| T |
1323 |
atgtcacagcatcttcccaatttgagaagattggatctaagtgactccaagaagctagaaaagatagaagattttggacagtttcctaatcttgagtggt |
1224 |
T |
|
| Q |
224 |
taagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctgga |
323 |
Q |
| |
|
||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||| ||| | |
|
|
| T |
1223 |
taaatttggaaagatgtataaaacttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatttagagcgttgctataatctagt |
1124 |
T |
|
| Q |
324 |
aagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaa |
390 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||||||||| ||| ||||||||| |
|
|
| T |
1123 |
aagcatacccaacaacatattcggtcttagctctcttaaatatctaaatatgtctggatgttccaaa |
1057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 130 - 390
Target Start/End: Complemental strand, 7069 - 6803
Alignment:
| Q |
130 |
atgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatag------gagagttcccgaatcttgagtggc |
223 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||||||| |||||| || || | ||||||| || || |||| || |||||||||||| |
|
|
| T |
7069 |
atgtcacagcatcttcccaatttgagaagattggatctaagtgactccaagaagctagaaaagatagaagattttggacagtttcctaatcttgagtggt |
6970 |
T |
|
| Q |
224 |
taagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctgga |
323 |
Q |
| |
|
||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||| ||| | |
|
|
| T |
6969 |
taaatttggaaagatgtataaaacttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatttagagcgttgctataatctagt |
6870 |
T |
|
| Q |
324 |
aagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaa |
390 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||||||||| ||| ||||||||| |
|
|
| T |
6869 |
aagcatacccaacaacatattcggtcttagctctcttaaatatctaaatatgtctggatgttccaaa |
6803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 130 - 299
Target Start/End: Original strand, 31503568 - 31503743
Alignment:
| Q |
130 |
atgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataata------ggagagttcccgaatcttgagtggc |
223 |
Q |
| |
|
|||||||||||||| | |||||| ||||| ||||||||||| ||||||| |||| | ||||||| | |||||||||||||| |||||| ||| |
|
|
| T |
31503568 |
atgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaaccttgagcggc |
31503667 |
T |
|
| Q |
224 |
taagtttggaagaatgtataaaccttgtggagatggatccatctattggacttctagaaaagctttcttacttgaa |
299 |
Q |
| |
|
|| | |||||| ||||||||| |||||| |||| |||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
31503668 |
tagatctggaaggatgtataaaacttgtgcagatagatccatctattggtcttctaacaaagcttgtttacttgaa |
31503743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 396
Target Start/End: Original strand, 31498588 - 31498727
Alignment:
| Q |
257 |
tggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctggaaagcatacccaacaacatattcagtcttagctc |
356 |
Q |
| |
|
||||||||||||||||||||||| |||| || || |||||||||| | | ||| | | ||| | ||||||||||||||||||||| |||| |||| |
|
|
| T |
31498588 |
tggatccatctattggacttctaagaaagattgtttccttgaatttaaaagattgcaagaatcttgtaagcatacccaacaacatatttggtctcagctt |
31498687 |
T |
|
| Q |
357 |
tcttgaagatctaaatatgcgtggctgttccaaagtgttt |
396 |
Q |
| |
|
|||| |||||||||||||| |||| |||||| |||||||| |
|
|
| T |
31498688 |
tcttaaagatctaaatatgtgtgggtgttccgaagtgttt |
31498727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 31478490 - 31478558
Alignment:
| Q |
199 |
ggagagttcccgaatcttgagtggctaagtttggaagaatgtataaaccttgtggagatggatccatct |
267 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||| ||||||||| |||||| || ||||||||||| |
|
|
| T |
31478490 |
ggagagttcccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagttggatccatct |
31478558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 419
Target Start/End: Complemental strand, 31032605 - 31032510
Alignment:
| Q |
324 |
aagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagtgtttgatgatccaatgcatttgaagaa |
419 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||| || |||||||| | || ||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
31032605 |
aagcatacccaacaacatatttggtctcacctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaatgcaattgaagaa |
31032510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 31471918 - 31471958
Alignment:
| Q |
130 |
atgtcacagtatcttcccaatttaagaaaattggatctaag |
170 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
31471918 |
atgtcacagtatctgcccaatttgagaaatttggatctaag |
31471958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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