View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18493_high_15 (Length: 272)
Name: NF18493_high_15
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_high_15 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 21705194 - 21704938
Alignment:
| Q |
16 |
aatcatgtattgaaaaacactgcaagtttgatagagcaccaacatccacaaccatctcagcaacaaactcatcagcagatgctcctatgaagtaaaactc |
115 |
Q |
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| T |
21705194 |
aatcatgtattgaaaaacactgcaagtttgatagagcagcaacatccacaaccatctcagcaaccaactcatcagcagatgctcctgtgaagtaaaacac |
21705095 |
T |
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| Q |
116 |
ttctagttgtgaacatctccttaatgctccattgtaggttttttcaaatatatcacttcctgataaatctagtagcttcagccttgtgagatttcccatt |
215 |
Q |
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| T |
21705094 |
ttctagttgtgaacatctccttaatgctccattgtaggttttttcaaatatatcacttcctgataaatctagtagcttcagccttgtgagatttcccatt |
21704995 |
T |
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| Q |
216 |
tcataaggaagttcattgaacttacaacgtcgcaagagaagaacctcaagcattgtt |
272 |
Q |
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| T |
21704994 |
tcataaggaagttcattgaacttacaacgtcgcaagagaagaacctcaagcattgtt |
21704938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 21714424 - 21714581
Alignment:
| Q |
115 |
cttctagttgtgaacatctccttaatgctccattgtaggttttttcaaatatatcacttcctgataaatctagtagcttcagccttgtgagatttcccat |
214 |
Q |
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| T |
21714424 |
cttctagttgtgaacatctcccaactgcaccattataggtttgttgataaaaatgacatcttgacaaatctagtagcttcagtcttgtgaggctacctat |
21714523 |
T |
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| Q |
215 |
ttcataaggaagttcattgaacttacaacgtcgcaagagaagaacctcaagcattgtt |
272 |
Q |
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| T |
21714524 |
ttcgcatggaagttcattgaagtcacaatgtcgcaagtcaagaacctcgagccttgtt |
21714581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 21123955 - 21123801
Alignment:
| Q |
111 |
aactcttctagttgtgaacatctccttaatgctccattgtaggttttttcaaatatatcacttcctgataaatctagtagcttcagccttgtgagatttc |
210 |
Q |
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| T |
21123955 |
aactcctctagttgtgaacatttccctattgctccattatagttgttttcagaaatacgacactctgataaatccagcaacttaaggcttattagttttc |
21123856 |
T |
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| Q |
211 |
ccatttcataaggaagttcattgaacttacaacgtcgcaagagaagaacctcaag |
265 |
Q |
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| T |
21123855 |
ctatttcgataggaagttcattgaagttacaacgtctcaagtcaagaacctcaag |
21123801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 21714311 - 21714372
Alignment:
| Q |
14 |
agaatcatgtattgaaaaacactgcaagtttgatagagcaccaacatccacaaccatctcag |
75 |
Q |
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| T |
21714311 |
agaatcatgaattgaaaaacactgcaactttgagagacaaccaatatctacaacgatctcag |
21714372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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