View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18493_high_6 (Length: 395)
Name: NF18493_high_6
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 87 - 379
Target Start/End: Original strand, 3988814 - 3989107
Alignment:
| Q |
87 |
gagcgcggcctttcttgagcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaaacattgccaacattt |
186 |
Q |
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| T |
3988814 |
gagcgtggcctttcttgagcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaaacattgccaacattt |
3988913 |
T |
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| Q |
187 |
tgaggttttgcaaagagcagcaaaatgagtcaattgaatgaaacaaacagcaacaattagttgatggtaaaattctaatacatctgccttataaaaatgt |
286 |
Q |
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| T |
3988914 |
ttag-ttttgcaaagagcagcaacatgagtcaattgaatgaaacaaacagcaacaattagttgatggtaaaattctaatacatctgccttataaaaatgt |
3989012 |
T |
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| Q |
287 |
atcgtcattctttgattgttaattatatacaggtataaatattagttggcaaaatgttttactaaatctta--ctctctctcctacaataagtgt |
379 |
Q |
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| T |
3989013 |
atcgtcattctttgattgttaattatataaaggtataaatattagttggcaaaatgttttactaaatcttactctctctctcctacaataagtgt |
3989107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 3984013 - 3984147
Alignment:
| Q |
90 |
cgcggcctttcttgagcatagttcactcgtactgtccgaccatgaagttcctgtga----caacataattttagatgctacaagaaacattgccaacatt |
185 |
Q |
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| T |
3984013 |
cgcgccctttctgtagcatagttcactcgtactgtccgaccatcaagttcctgtgacaaccaacataa-tttagatgctacaagaaacattgccaaca-- |
3984109 |
T |
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| Q |
186 |
ttgaggttttgcaaagagcagcaaaatgagtcaattgaa |
224 |
Q |
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| T |
3984110 |
tcga-gttttgcaaagagcagcaaaatgagtcaattgaa |
3984147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 104 - 248
Target Start/End: Original strand, 3863993 - 3864132
Alignment:
| Q |
104 |
agcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaaacattgccaacattttgaggttttgcaaagag |
203 |
Q |
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| T |
3863993 |
agcatagttcactcgtaccttccgaccataaagatcctgtgacaacacaattttagatgctacaagaagcattgccaacattttga-gttttgcaaagag |
3864091 |
T |
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| Q |
204 |
cagcaaaatgagtcaattgaatgaaacaaacagcaacaattagtt |
248 |
Q |
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| T |
3864092 |
cagcaaaatgtgtc----gaatgaaacaaacggcaaaaatgagtt |
3864132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 479511 - 479444
Alignment:
| Q |
104 |
agcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaa |
171 |
Q |
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| T |
479511 |
agcatagttcactcgtaccctccgaccattaggatcctgcgacaacacaattttaaatgctacaagaa |
479444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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