View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18493_high_8 (Length: 360)
Name: NF18493_high_8
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 46 - 344
Target Start/End: Original strand, 3988808 - 3989107
Alignment:
| Q |
46 |
tacccagagcgcggcctttcttgagcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaaacattgcca |
145 |
Q |
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| T |
3988808 |
tacccagagcgtggcctttcttgagcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaaacattgcca |
3988907 |
T |
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| Q |
146 |
acattttgaggttttgcaaagagcagcaaaatgagtcaattgaatgaaacaaacagcaacaattagttgatggtaaaattctaatacatctgccttataa |
245 |
Q |
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| T |
3988908 |
acatttttag-ttttgcaaagagcagcaacatgagtcaattgaatgaaacaaacagcaacaattagttgatggtaaaattctaatacatctgccttataa |
3989006 |
T |
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| Q |
246 |
aaatgtatcgtcattctttgattgttaattatatacaggtataaatattagttggcaaaatgttttactaaatctta--ctctctctcctacaataagtg |
343 |
Q |
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| T |
3989007 |
aaatgtatcgtcattctttgattgttaattatataaaggtataaatattagttggcaaaatgttttactaaatcttactctctctctcctacaataagtg |
3989106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 3984013 - 3984147
Alignment:
| Q |
55 |
cgcggcctttcttgagcatagttcactcgtactgtccgaccatgaagttcctgtga----caacataattttagatgctacaagaaacattgccaacatt |
150 |
Q |
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| T |
3984013 |
cgcgccctttctgtagcatagttcactcgtactgtccgaccatcaagttcctgtgacaaccaacataa-tttagatgctacaagaaacattgccaaca-- |
3984109 |
T |
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| Q |
151 |
ttgaggttttgcaaagagcagcaaaatgagtcaattgaa |
189 |
Q |
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| T |
3984110 |
tcga-gttttgcaaagagcagcaaaatgagtcaattgaa |
3984147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 3863993 - 3864132
Alignment:
| Q |
69 |
agcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaaacattgccaacattttgaggttttgcaaagag |
168 |
Q |
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| T |
3863993 |
agcatagttcactcgtaccttccgaccataaagatcctgtgacaacacaattttagatgctacaagaagcattgccaacattttga-gttttgcaaagag |
3864091 |
T |
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| Q |
169 |
cagcaaaatgagtcaattgaatgaaacaaacagcaacaattagtt |
213 |
Q |
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| T |
3864092 |
cagcaaaatgtgtc----gaatgaaacaaacggcaaaaatgagtt |
3864132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 479511 - 479444
Alignment:
| Q |
69 |
agcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaa |
136 |
Q |
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| T |
479511 |
agcatagttcactcgtaccctccgaccattaggatcctgcgacaacacaattttaaatgctacaagaa |
479444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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