View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18493_low_1 (Length: 638)
Name: NF18493_low_1
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 308 - 623
Target Start/End: Complemental strand, 41236398 - 41236084
Alignment:
| Q |
308 |
atgttactcttttgtttataaccgagttaaaattttgaatcattgatatagttacagtaatgtatataagtatatgtcattgtcatgtatatattatttt |
407 |
Q |
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| T |
41236398 |
atgttactcttttgtttataaccgagttaaaattttgaatcattgatatagttacagtcatgtatataagtatatgtcattgtcatgtatatattatttt |
41236299 |
T |
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| Q |
408 |
aatatcaagtaaactctcgttatagagaaaccgcgagtttttaaactcgattttgacagccttgattcatactacgatcatatatatgtatataaaacta |
507 |
Q |
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| T |
41236298 |
aatatcaagtaaactctcgttatagagaaaccgcgagtttttaaactcgattttgacagccttgattcatactacgatcatatatatgtatataaaacta |
41236199 |
T |
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| Q |
508 |
tacacgcttgcaaattttcctttatgcttccccaaccacattagttgaagttatttgttttttctcttctaactcttatgtttgtttgccaatccttaat |
607 |
Q |
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| T |
41236198 |
tacacgcttgcacattttcctttatgcttccccaaccacattagttgaagttatttgttttttctcttctaactc-taagtttgtttgccaatccttaat |
41236100 |
T |
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| Q |
608 |
cttgaacatacatgtt |
623 |
Q |
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| T |
41236099 |
cttgaacatacatgtt |
41236084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 41236682 - 41236481
Alignment:
| Q |
23 |
gatacacacgaataattgttaaaaccacaaattaactacgattccatgagtctaatgatctatttcaagttgatctaactgtaaactcaaattttagtaa |
122 |
Q |
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| T |
41236682 |
gatacacacgaataattgttaaaaccacaaattaactacgattccatgagtctaatgatctatttcaagttgatctaactgtaa-ctcaaattttagtaa |
41236584 |
T |
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| Q |
123 |
actttggtaaacacgcagtgaactaaactttgagtctgagtatcaatttcaattccatgaagtcgagtttaatcgcagtgaactcgagtaaaatcacaga |
222 |
Q |
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| T |
41236583 |
actttggtaaacatgcagtgaactaaactttgagtctaagtatcaatttcaattccatgaagtcgagtttaatcgcagtgaactcgagtaaagtcacaga |
41236484 |
T |
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| Q |
223 |
aga |
225 |
Q |
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||| |
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| T |
41236483 |
aga |
41236481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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