View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18493_low_11 (Length: 340)
Name: NF18493_low_11
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 24 - 324
Target Start/End: Complemental strand, 4840684 - 4840384
Alignment:
| Q |
24 |
aattttgcgtttggcgctgaagtaattgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatcacttcatcgaacctaaacctc |
123 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840684 |
aattttgcgtctggcgctgaagtaattgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatcacttcatcgaacctaaacctc |
4840585 |
T |
|
| Q |
124 |
tcaaacatctacccacaaatccttcaaattttaacttctctactccgaacccttcaaaccatatgccatcatctcaacttctcacagaaccctctcatct |
223 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4840584 |
tcaaacatctacccacagatccttcaaattttaacttctctactccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctctcatct |
4840485 |
T |
|
| Q |
224 |
ccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactccaccctttgacgaaactgtcgaactaatagaagtcgttt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4840484 |
ccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttt |
4840385 |
T |
|
| Q |
324 |
t |
324 |
Q |
| |
|
| |
|
|
| T |
4840384 |
t |
4840384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 28157205 - 28157513
Alignment:
| Q |
16 |
ctcaaaataattttgcgtttggcgctgaagtaattgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatcacttcatcgaacc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28157205 |
ctcaaaataattttgcgtttggcgctgaagtaattgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatcacttcatcgaacc |
28157304 |
T |
|
| Q |
116 |
taaacctctcaaacatctacccacaaatccttcaaattttaacttctctactccgaacccttcaaaccatatgccatcatctcaacttctcacagaaccc |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
28157305 |
taaacctctcaaacatctacccacatatccttcaaattttaacttctctagtccgaacccttcaaaccatatgtcatcatctcaacttctcactgaaccc |
28157404 |
T |
|
| Q |
216 |
tctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactccaccctttgacgaaactgtcgaactaataga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
28157405 |
tctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacgaattcattcactgcaccctttgatgaaactgtcgaactaataga |
28157504 |
T |
|
| Q |
316 |
agtcgtttt |
324 |
Q |
| |
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||||||||| |
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|
| T |
28157505 |
agtcgtttt |
28157513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 14361102 - 14360796
Alignment:
| Q |
18 |
caaaataattttgcgtttggcgctgaagtaattgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatcacttcatcgaaccta |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14361102 |
caaaataattttgcgtttggcgttgaagtaatttttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatcacttcatcgaaccta |
14361003 |
T |
|
| Q |
118 |
aacctctcaaacatctacccacaaatccttcaaattttaacttctctactccgaacccttcaaaccatatgccatcatctcaacttctcacagaaccctc |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
14361002 |
accctctcaaacatctacccacaaatccttcaaattttaacttctctagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctc |
14360903 |
T |
|
| Q |
218 |
tcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactccaccctttgacgaaactgtcgaactaatagaag |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
14360902 |
tcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactgcaccctttgacgaaactgacgaactaatagaag |
14360803 |
T |
|
| Q |
318 |
tcgtttt |
324 |
Q |
| |
|
||||||| |
|
|
| T |
14360802 |
tcgtttt |
14360796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 13069942 - 13069632
Alignment:
| Q |
18 |
caaaataattttgcgtttggcgctgaagtaa----ttgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatcacttcatcgaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13069942 |
caaaataattttgcgtttggcgctgaagtaagtaattgttcattccctctcctcttttctgcacccaaagcacaacttctaccaaaatcacttcatcgaa |
13069843 |
T |
|
| Q |
114 |
cctaaacctctcaaacatctacccacaaatccttcaaattttaacttctctactccgaacccttcaaaccatatgccatcatctcaacttctcacagaac |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
13069842 |
cctaaacctctcaaacatctacccacagatccttcaaattttaacttctctagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaac |
13069743 |
T |
|
| Q |
214 |
cctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactccaccctttgacgaaactgtcgaactaata |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| |
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| T |
13069742 |
cctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacgaattcattcactgcaccctttgatgaaactgtcgaactaata |
13069643 |
T |
|
| Q |
314 |
gaagtcgtttt |
324 |
Q |
| |
|
||||||||||| |
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|
| T |
13069642 |
gaagtcgtttt |
13069632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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