View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18493_low_13 (Length: 299)

Name: NF18493_low_13
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18493_low_13
NF18493_low_13
[»] chr3 (27 HSPs)
chr3 (196-287)||(38888277-38888368)
chr3 (28-135)||(43747699-43747806)
chr3 (196-285)||(46235373-46235462)
chr3 (43-135)||(46235523-46235615)
chr3 (196-283)||(43747867-43747954)
chr3 (28-135)||(27516256-27516363)
chr3 (201-287)||(5175500-5175586)
chr3 (28-135)||(4986945-4987052)
chr3 (31-134)||(50001893-50001996)
chr3 (28-134)||(38888430-38888535)
chr3 (31-135)||(5175653-5175757)
chr3 (28-132)||(36040327-36040431)
chr3 (28-134)||(39128063-39128169)
chr3 (43-131)||(44247663-44247751)
chr3 (28-95)||(18371067-18371134)
chr3 (27-130)||(48519391-48519494)
chr3 (28-134)||(43659042-43659148)
chr3 (28-134)||(52253832-52253938)
chr3 (56-132)||(24929126-24929202)
chr3 (204-284)||(5241252-5241334)
chr3 (28-70)||(29109238-29109280)
chr3 (28-94)||(39197933-39197999)
chr3 (55-133)||(47300346-47300424)
chr3 (28-70)||(52796834-52796876)
chr3 (201-284)||(5185780-5185862)
chr3 (28-80)||(31880675-31880727)
chr3 (28-80)||(52099828-52099880)
[»] chr8 (21 HSPs)
chr8 (196-287)||(26747831-26747922)
chr8 (31-135)||(24100619-24100723)
chr8 (28-135)||(26747983-26748090)
chr8 (29-135)||(27631495-27631601)
chr8 (196-287)||(27631662-27631753)
chr8 (31-134)||(34649640-34649743)
chr8 (28-134)||(22914472-22914578)
chr8 (224-286)||(24100809-24100871)
chr8 (28-135)||(9636237-9636344)
chr8 (28-135)||(43325453-43325560)
chr8 (28-134)||(33099629-33099735)
chr8 (29-135)||(33968843-33968949)
chr8 (28-95)||(3547237-3547304)
chr8 (29-135)||(18753961-18754067)
chr8 (28-96)||(9579366-9579434)
chr8 (43-135)||(30266028-30266120)
chr8 (28-79)||(2116597-2116648)
chr8 (28-135)||(28860360-28860467)
chr8 (28-95)||(44061188-44061255)
chr8 (44-82)||(13245266-13245304)
chr8 (27-80)||(33449453-33449506)
[»] chr5 (22 HSPs)
chr5 (28-135)||(7529673-7529780)
chr5 (196-287)||(7529841-7529932)
chr5 (31-135)||(35468046-35468150)
chr5 (200-287)||(9269620-9269706)
chr5 (196-250)||(35467931-35467985)
chr5 (28-135)||(29801658-29801765)
chr5 (28-135)||(38503514-38503621)
chr5 (28-132)||(11447260-11447364)
chr5 (28-135)||(28905566-28905673)
chr5 (28-135)||(28941961-28942068)
chr5 (28-130)||(38923949-38924051)
chr5 (31-135)||(233423-233527)
chr5 (28-135)||(1157010-1157117)
chr5 (28-95)||(10830342-10830409)
chr5 (37-96)||(33960163-33960222)
chr5 (28-95)||(37226096-37226163)
chr5 (28-135)||(39039806-39039913)
chr5 (28-74)||(9780164-9780210)
chr5 (85-135)||(18515691-18515741)
chr5 (28-113)||(9267930-9268015)
chr5 (57-134)||(24905437-24905514)
chr5 (258-287)||(35467571-35467600)
[»] chr1 (26 HSPs)
chr1 (196-287)||(4796029-4796120)
chr1 (196-287)||(25659084-25659175)
chr1 (196-287)||(8170497-8170588)
chr1 (31-135)||(4795864-4795968)
chr1 (31-131)||(8170332-8170432)
chr1 (28-135)||(25658916-25659023)
chr1 (31-133)||(43360276-43360378)
chr1 (31-133)||(23201943-23202045)
chr1 (27-132)||(27803178-27803283)
chr1 (28-135)||(16660013-16660120)
chr1 (31-134)||(26940367-26940470)
chr1 (28-95)||(30724590-30724657)
chr1 (28-135)||(50372776-50372883)
chr1 (28-111)||(30720910-30720993)
chr1 (28-94)||(29733274-29733340)
chr1 (16-132)||(30196250-30196367)
chr1 (28-133)||(46614505-46614610)
chr1 (28-131)||(4851386-4851487)
chr1 (28-80)||(10617321-10617373)
chr1 (28-79)||(2167792-2167843)
chr1 (28-95)||(46085524-46085591)
chr1 (28-94)||(32154085-32154151)
chr1 (43-135)||(17150901-17150993)
chr1 (85-133)||(19067290-19067338)
chr1 (85-133)||(19115180-19115228)
chr1 (43-95)||(43361488-43361540)
[»] scaffold0060 (2 HSPs)
scaffold0060 (28-126)||(67853-67951)
scaffold0060 (196-287)||(67690-67782)
[»] chr7 (18 HSPs)
chr7 (196-287)||(2430704-2430795)
chr7 (31-135)||(2430539-2430643)
chr7 (28-132)||(48402507-48402611)
chr7 (28-134)||(33989736-33989842)
chr7 (28-134)||(37031206-37031312)
chr7 (43-134)||(46290439-46290530)
chr7 (28-135)||(34996775-34996882)
chr7 (31-95)||(3563095-3563159)
chr7 (28-96)||(10048255-10048323)
chr7 (28-96)||(41816534-41816602)
chr7 (28-95)||(41203963-41204030)
chr7 (28-94)||(11315507-11315573)
chr7 (28-134)||(11202362-11202466)
chr7 (28-135)||(20383866-20383973)
chr7 (28-79)||(45657775-45657826)
chr7 (28-134)||(43051737-43051843)
chr7 (29-134)||(11749145-11749250)
chr7 (86-134)||(22643918-22643966)
[»] chr2 (19 HSPs)
chr2 (196-287)||(5077246-5077337)
chr2 (28-118)||(39676231-39676321)
chr2 (28-135)||(5077095-5077201)
chr2 (28-134)||(725111-725217)
chr2 (28-134)||(38376465-38376571)
chr2 (23-134)||(2020131-2020242)
chr2 (28-111)||(18460234-18460317)
chr2 (31-134)||(27337190-27337293)
chr2 (31-134)||(3207213-3207316)
chr2 (28-135)||(9225130-9225237)
chr2 (28-95)||(32864841-32864908)
chr2 (28-134)||(4843400-4843506)
chr2 (57-134)||(33618095-33618172)
chr2 (28-93)||(41322038-41322103)
chr2 (31-135)||(42578514-42578616)
chr2 (43-135)||(3462611-3462703)
chr2 (28-135)||(9272998-9273105)
chr2 (28-94)||(10913454-10913520)
chr2 (31-135)||(5590527-5590631)
[»] scaffold0096 (2 HSPs)
scaffold0096 (28-132)||(28020-28124)
scaffold0096 (196-287)||(27864-27956)
[»] chr4 (29 HSPs)
chr4 (196-287)||(49233162-49233253)
chr4 (29-135)||(6447016-6447122)
chr4 (43-135)||(53921983-53922075)
chr4 (196-287)||(49889325-49889416)
chr4 (28-135)||(49233314-49233421)
chr4 (31-131)||(45781905-45782005)
chr4 (196-287)||(53921833-53921922)
chr4 (28-134)||(32208258-32208364)
chr4 (196-270)||(45781779-45781853)
chr4 (26-95)||(30658216-30658285)
chr4 (31-134)||(56051164-56051267)
chr4 (28-96)||(8281560-8281628)
chr4 (28-134)||(25052282-25052387)
chr4 (18-134)||(34413003-34413119)
chr4 (28-135)||(6329373-6329479)
chr4 (28-135)||(50381862-50381969)
chr4 (28-134)||(41326547-41326653)
chr4 (28-134)||(51075106-51075212)
chr4 (28-135)||(11671848-11671952)
chr4 (29-134)||(44937019-44937124)
chr4 (42-135)||(52399302-52399395)
chr4 (204-244)||(30658065-30658105)
chr4 (28-135)||(33633070-33633175)
chr4 (56-131)||(34841034-34841109)
chr4 (28-95)||(53062072-53062139)
chr4 (28-135)||(53448027-53448134)
chr4 (28-74)||(34411325-34411371)
chr4 (247-286)||(6447200-6447240)
chr4 (28-96)||(35106239-35106307)
[»] scaffold0385 (1 HSPs)
scaffold0385 (28-134)||(11840-11945)
[»] chr6 (4 HSPs)
chr6 (46-135)||(32818743-32818832)
chr6 (28-95)||(3711429-3711496)
chr6 (28-70)||(251800-251842)
chr6 (43-135)||(9244765-9244857)
[»] scaffold0380 (1 HSPs)
scaffold0380 (28-94)||(48-114)
[»] scaffold0100 (1 HSPs)
scaffold0100 (28-133)||(44390-44495)
[»] scaffold0072 (1 HSPs)
scaffold0072 (28-95)||(46515-46582)
[»] scaffold0031 (1 HSPs)
scaffold0031 (28-95)||(1487-1554)
[»] scaffold0069 (1 HSPs)
scaffold0069 (28-70)||(35962-36004)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 38888368 - 38888277
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  38888368 tatccttgataagacaacattataatttatgattaattaaaaaaccaatggcataatagacttttttgtcttcttccctctttcttctcact 38888277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 43747699 - 43747806
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||| | |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  43747699 gtgtgtttggttcggaagagaagctggaaagagagaaataggtaagagagagtttgtgaagagagaaagggatgagaaatagagaagatttgatgtattg 43747798  T
Q  128 tttggtat 135  Q
    ||||||||    
T  43747799 tttggtat 43747806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 46235462 - 46235373
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctca 285  Q
    |||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  46235462 tatccttgataagacatcattataatttatgattaattaaaaaaccaatggcataatagacttttttgtcttcttccctctttcttctca 46235373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 46235615 - 46235523
Alignment:
Q  43 aagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggtat 135  Q
    ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  46235615 aagagaagttgaaaagagaggaataggtaagagagagtttgtgaagagagaaagtgatgagaaatagagaatatttaatgtattgtttggtat 46235523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 43747867 - 43747954
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttct 283  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||| |||||||    
T  43747867 tatccttgataagacaacattataatttatgaataattaaaaaaccaatggcataatagacttttttgtcttcttctctcattcttct 43747954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 27516363 - 27516256
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||| ||||| |  |||||||||||  |||| ||||||||| | |||||||||||||    
T  27516363 gtgtgtttggtttggaagagaagttgagaagagagaaataggtaagagagagtatgagaagagagaaaaagatgagaaatagagtagatttgatgtattg 27516264  T
Q  128 tttggtat 135  Q
    ||||||||    
T  27516263 tttggtat 27516256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 5175586 - 5175500
Alignment:
Q  201 ttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||  |||| ||||||||||| ||||||||||||||| ||||||||    
T  5175586 ttgataagacaacattataatttatgattaattgaaaaaccaatgacatattagacttttttatcttcttccctctttgttctcact 5175500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 4987052 - 4986945
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||| |||||||||||  ||||||||| ||||||||| ||||| |  |||||||||||  |||| ||||||||| | |||||||||||||    
T  4987052 gtgtgtttggtttggaagagaagttgagaagagagaagtaggtaagagagagtatgagaagagagaaaaagatgagaaatagagtagatttgatgtattg 4986953  T
Q  128 tttggtat 135  Q
    ||| ||||    
T  4986952 tttagtat 4986945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 50001996 - 50001893
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||| ||||| |  ||||||||||||   || ||||||||| | ||||||||||||||||    
T  50001996 tgtttggtttggaagagaagttgtaaagagagaaataggtgagagagagtatgagaagagagaaagatgtgagaaatagagtagatttgatgtattgttt 50001897  T
Q  131 ggta 134  Q
    ||||    
T  50001896 ggta 50001893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 38888535 - 38888430
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||||   ||||||| ||| ||||||||||||| |||||| ||||||| ||||||||||||  |||| ||||||||||| |||| ||||||||    
T  38888535 gtgtgtttggttcagaagagaaattgaaaagagagaaataagtaagagagagtttgtgaagagagaaaatgatgagaaatagagaagattt-atgtattg 38888437  T
Q  128 tttggta 134  Q
    |||||||    
T  38888436 tttggta 38888430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 5175757 - 5175653
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| ||| |||||| ||||||||| ||| ||||||| |||||||  ||| |||||||  |||| ||||||||||| ||||||| ||||||||    
T  5175757 tgtttggtttggaagggaagttagaaagagagtaatgggtaagagagagtttgagaaaagagaaaaagatgagaaatagagaagatttgatatattgttt 5175658  T
Q  131 ggtat 135  Q
    |||||    
T  5175657 ggtat 5175653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 36040327 - 36040431
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||| | |||||||||||  ||||||||||||||| ||| ||||| || |||||||||||  | || ||||||||| | |||||||||||||    
T  36040327 gtgtgtttggttaggaagagaagttgtgaagagagaaataggtgagagagagtgtaggaagagagaaaaaggtgagaaatagagtagatttgatgtattg 36040426  T
Q  128 tttgg 132  Q
    |||||    
T  36040427 tttgg 36040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 39128063 - 39128169
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |  ||||||||  |||||||||||| || ||| ||||||  |||||||||||||   || ||||||||| | |||||||||||||    
T  39128063 gtgtgtttggtttagagaagaagttgagaagagagaaataagtgagagagagttagtgaagagagaaagaagtgagaaatagagtagatttgatgtattg 39128162  T
Q  128 tttggta 134  Q
    |||||||    
T  39128163 tttggta 39128169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 44247751 - 44247663
Alignment:
Q  43 aagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttg 131  Q
    |||||||||||  ||||||||||||||||||| ||||| |  |||||||||||| | || ||||||||| | |||||| | ||||||||    
T  44247751 aagagaagttgtgaagagagaaataggtaagagagagtatgagaagagagaaagaggtgagaaatagagtagatttgagggattgtttg 44247663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 18371134 - 18371067
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    ||||||||||| |  |||||||||||  ||||||||| ||||||||| ||||||| ||||||||||||    
T  18371134 gtgtgtttggtatagaagagaagttgtgaagagagaagtaggtaagagagagtttgtgaagagagaaa 18371067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 48519494 - 48519391
Alignment:
Q  27 tgtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtatt 126  Q
    ||||||||||||| || ||||||| ||  ||||||||| ||| ||||| ||||| |  |||||||||||| |||| |||||| || | ||||||||| ||    
T  48519494 tgtgtgtttggttcgtgagagaagatgagaagagagaagtagataagagagagtatgagaagagagaaagagatgtgaaatacagtagatttgatgtgtt 48519395  T
Q  127 gttt 130  Q
    ||||    
T  48519394 gttt 48519391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 43659042 - 43659148
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |||||||||||  |||||||||||| || ||| ||||| |  ||||||||||||  ||| | ||||||| | ||||||||  |||    
T  43659042 gtgtgtttggtttagaagagaagttgtgaagagagaaataagtgagagagagtatgggaagagagaaagaaatgaggaatagagtagatttgatgggttg 43659141  T
Q  128 tttggta 134  Q
    |||||||    
T  43659142 tttggta 43659148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 52253938 - 52253832
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |||||||||||  |||||||||||| || ||| ||||| |  |||||||||||| |||| |||||| || | |||||||   |||    
T  52253938 gtgtgtttggtttaaaagagaagttgtgaagagagaaatatgtgagagagagtatgggaagagagaaagagatgagaaatatagtagatttgataggttg 52253839  T
Q  128 tttggta 134  Q
    |||||||    
T  52253838 tttggta 52253832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 24929126 - 24929202
Alignment:
Q  56 aagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttgg 132  Q
    ||||||||||||||| ||| ||||| |  |||||||||||  |||| ||||||||| | |||||||| |||||||||    
T  24929126 aagagagaaataggtgagagagagtatgagaagagagaaatagatgagaaatagagtagatttgatgaattgtttgg 24929202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 5241334 - 5241252
Alignment:
Q  204 ataaaacaacattataatttatgattaatta-aaaaatcaatagcataatagac-ttttttgtcttcttccctctttcttctc 284  Q
    |||| |||| ||||||||| ||||||||||  |||||||||| | ||| ||||| |||||| | |||||||||||||||||||    
T  5241334 ataagacaatattataattgatgattaattgcaaaaatcaatggtatattagacattttttttattcttccctctttcttctc 5241252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 29109238 - 29109280
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggt 70  Q
    |||||||||||||| |||||||||||  |||||||||||||||    
T  29109238 gtgtgtttggtttggaagagaagttgtgaagagagaaataggt 29109280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 39197999 - 39197933
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaa 94  Q
    |||||||||||||  ||||||||||| ||||||||||| |||| ||| ||||| |  ||||||||||    
T  39197999 gtgtgtttggtttagaagagaagttgtaaagagagaaagaggtgagagagagtatgagaagagagaa 39197933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 47300424 - 47300346
Alignment:
Q  55 aaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggt 133  Q
    |||||||||||||||| ||| ||| | |||||||||| |||   ||| ||||||||| | |||||| ||||||||||||    
T  47300424 aaagagagaaataggtgagagagattatatgaagagaaaaataaatgagaaatagagtagatttgaggtattgtttggt 47300346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 52796876 - 52796834
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggt 70  Q
    |||||||||||||| |||||||||||  |||||||||||||||    
T  52796876 gtgtgtttggtttggaagagaagttgtgaagagagaaataggt 52796834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 5185862 - 5185780
Alignment:
Q  201 ttgataaaacaacattataatttatgattaatt-aaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctc 284  Q
    |||||||  ||| |||||||||||||||||||| |||||| |||| | ||| |||||  |||||| ||||| |||||||||||||    
T  5185862 ttgataagccaatattataatttatgattaattgaaaaaaccaatggtatattagac--ttttgtgttctttcctctttcttctc 5185780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 31880675 - 31880727
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagt 80  Q
    ||||||||| |||  |||||||||||  ||||||||||||||||||| |||||    
T  31880675 gtgtgtttgatttaaaagagaagttgtgaagagagaaataggtaagagagagt 31880727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 52099880 - 52099828
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagt 80  Q
    |||||||||||||  |||||||||||  |||||| |||||||||||| |||||    
T  52099880 gtgtgtttggtttagaagagaagttgtgaagagaaaaataggtaagagagagt 52099828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 26747922 - 26747831
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||||||||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  26747922 tatccttgataagacaacattctaatttatgattaattaaaaaaccaatggcataatagacttttttgtcttcttccctctttcttctcact 26747831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 24100619 - 24100723
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||| |||||||  |||||||||||| |||| ||||||||||| ||||||||||||||||    
T  24100619 tgtttggtttggaagagaagttggaaacagagaaataggcaagagagagtttgagaagagagaaagagatgagaaatagagaagatttgatgtattgttt 24100718  T
Q  131 ggtat 135  Q
    |||||    
T  24100719 ggtat 24100723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 26748090 - 26747983
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||| |||||||  |||||||||||| |||| ||||||||||| |||||||||||||    
T  26748090 gtgtgtttggttcggaagagaagttgaaaagagagaaataggtaagagagagtttgcgaagagagaaagtgatgagaaatagagaagatttgatgtattg 26747991  T
Q  128 tttggtat 135  Q
    | ||||||    
T  26747990 tatggtat 26747983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 27631495 - 27631601
Alignment:
Q  29 tgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgt 128  Q
    ||||||||||| | ||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||  |||| ||||||||||| ||||||||||||||    
T  27631495 tgtgtttggttcggaagagaagttggaaaaagagaaataggttagagagagtttgtgaagagagaaaatgatgagaaatagagaagatttgatgtattgt 27631594  T
Q  129 ttggtat 135  Q
    |||||||    
T  27631595 ttggtat 27631601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 27631662 - 27631753
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    ||||||| |||| | ||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  27631662 tatccttaataagataacattacactttatgattaattaaaaaaccaatggcataatagacttttttgtcttcttccctctttcttcacact 27631753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 34649743 - 34649640
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||| ||||| |  |||||||||||    || ||||||||| | ||||||||||||||||    
T  34649743 tgtttggtttgaaagagaagttgtaaagagagaaataggtgagagagagtatgagaagagagaaaaatgtgagaaatagagtagatttgatgtattgttt 34649644  T
Q  131 ggta 134  Q
    ||||    
T  34649643 ggta 34649640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 22914578 - 22914472
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||| |  |||||||| || |||||||||||||||||||| ||||  |   ||||||||||  |||| ||||||||| | |||||||||||||    
T  22914578 gtgtgtttggtgtagaagagaagatgtaaagagagaaataggtaagagagagaatgaaaagagagaaaaagatgagaaatagagtagatttgatgtattg 22914479  T
Q  128 tttggta 134  Q
    |||||||    
T  22914478 tttggta 22914472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 24100809 - 24100871
Alignment:
Q  224 atgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcac 286  Q
    ||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||    
T  24100809 atgattaattaaaaaatcaatggcatattagacatttttatcctcttccctctttcttctcac 24100871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 9636344 - 9636237
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||| |  |||||||||||  ||||||||| ||||||||| ||||||| ||||||||||||  | || |||||||||   |||||||| | ||    
T  9636344 gtgtgtttggtatagaagagaagttgcgaagagagaagtaggtaagagagagtttgtgaagagagaaaaaggtgagaaatagagtggatttgatggaatg 9636245  T
Q  128 tttggtat 135  Q
    ||||||||    
T  9636244 tttggtat 9636237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 43325453 - 43325560
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |||||||||||  ||||||||| ||||||||| |||||||  |||||||||||  | || ||||||| | | ||| |||| ||||    
T  43325453 gtgtgtttggtttagaagagaagttgtgaagagagaagtaggtaagagagagtttgagaagagagaaaaaggtgagaaatagggtagattcgatggattg 43325552  T
Q  128 tttggtat 135  Q
    ||||||||    
T  43325553 tttggtat 43325560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 33099735 - 33099629
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |||||||||||  |||||||||||| || ||| ||||| |  ||| |||||||| |||| ||||||||| | ||||||||  |||    
T  33099735 gtgtgtttggtttagaagagaagttgtgaagagagaaataagtgagagagagtatgggaatagagaaagagatgagaaatagagtagatttgatgggttg 33099636  T
Q  128 tttggta 134  Q
    |||||||    
T  33099635 tttggta 33099629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 33968843 - 33968949
Alignment:
Q  29 tgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgt 128  Q
    ||||||||||||| |||||||||||  ||||||||| ||||||||| ||||| |   ||||||||||  ||||  ||||| || ||||||||  ||||||    
T  33968843 tgtgtttggtttggaagagaagttgagaagagagaattaggtaagagagagtattaaaagagagaaaaagatgacaaatatagtatatttgaattattgt 33968942  T
Q  129 ttggtat 135  Q
    |||||||    
T  33968943 ttggtat 33968949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 3547237 - 3547304
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||||| |||||||||||  |||||||||||| |||||| ||||| |  |||||||||||    
T  3547237 gtgtgtttggtttggaagagaagttgtgaagagagaaatatgtaagagagagtatgggaagagagaaa 3547304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 18753961 - 18754067
Alignment:
Q  29 tgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgt 128  Q
    ||||||||||||  |||||||||||  ||||||||| || |||||| ||||| || |||||||||||  | ||  ||||| |  | ||||||||||||||    
T  18753961 tgtgtttggtttagaagagaagttgagaagagagaagtatgtaagagagagtataagaagagagaaaaaggtgaaaaatataatagatttgatgtattgt 18754060  T
Q  129 ttggtat 135  Q
    |||||||    
T  18754061 ttggtat 18754067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 9579434 - 9579366
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaag 96  Q
    |||||||||||||  |||||||||||  ||||||||||||  ||||| |||||||  ||||||||||||    
T  9579434 gtgtgtttggtttagaagagaagttgtgaagagagaaataaataagagagagtttgagaagagagaaag 9579366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 30266120 - 30266028
Alignment:
Q  43 aagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggtat 135  Q
    |||||||||||  |||||||||||| |||||| ||||| |  |||||||||||  | || ||||||||  | |||||||||| ||||||||||    
T  30266120 aagagaagttgtgaagagagaaatatgtaagagagagtatgagaagagagaaaaaggtgagaaatagaataaatttgatgtagtgtttggtat 30266028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 2116648 - 2116597
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagag 79  Q
    |||||||||||||| |||||||||||  ||||||||||||||| ||| ||||    
T  2116648 gtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagagagag 2116597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 28860360 - 28860467
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||| |  |||| ||||||  |||||| || ||||||||| |||||||   ||||||||||  ||||  |||||||| | |||||||| ||||    
T  28860360 gtgtgtttggtgtagaagacaagttgtgaagagataagtaggtaagagagagtttgaaaagagagaaaaagatgaaaaatagagtagatttgatggattg 28860459  T
Q  128 tttggtat 135  Q
    ||||||||    
T  28860460 tttggtat 28860467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 44061188 - 44061255
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||||| |||||||||||  |||||||||| |||| ||| ||||| |  |||||||||||    
T  44061188 gtgtgtttggtttggaagagaagttgtgaagagagaaagaggtgagagagagtatgagaagagagaaa 44061255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 13245266 - 13245304
Alignment:
Q  44 agagaagttggaaagagagaaataggtaagatagagttt 82  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  13245266 agagaagttgtaaagagagaaataggtaagaaagagttt 13245304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 33449453 - 33449506
Alignment:
Q  27 tgtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagt 80  Q
    ||||||||||||||| |||| |||||   ||||||||||||||||||| |||||    
T  33449453 tgtgtgtttggtttggaagataagttatgaagagagaaataggtaagagagagt 33449506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 7529673 - 7529780
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||| | |||||||||||||||||||||||||||||||| |||||||   |||||||||||||||| ||||||||||| |||||||||||||    
T  7529673 gtgtgtttggttcggaagagaagttggaaagagagaaataggtaagaaagagtttgataagagagaaagggatgagaaatagagaagatttgatgtattg 7529772  T
Q  128 tttggtat 135  Q
    ||||||||    
T  7529773 tttggtat 7529780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 7529841 - 7529932
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  7529841 tatccttgataagacaacattattttttatgattaattaaaaaatcaatggcatattagacttttttgtcttcttccctccttcttctcact 7529932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 35468150 - 35468046
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||| | ||||||||||||||||||||||||  | |||| |||||||  |||||||||||| |||| ||||||||||| ||||||||||||||||    
T  35468150 tgtttggttcggaagagaagttggaaagagagaaatgagcaagagagagtttgagaagagagaaagagatgagaaatagagaagatttgatgtattgttt 35468051  T
Q  131 ggtat 135  Q
    |||||    
T  35468050 ggtat 35468046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 9269620 - 9269706
Alignment:
Q  200 cttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||| ||||  | |||||||||||||||||||||||||||||||||    
T  9269620 cttgataagacaacattataatttatgattaatt-aaaaaccaataacatatcatacttttttgtcttcttccctctttcttctcact 9269706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 35467985 - 35467931
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcata 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35467985 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatggcata 35467931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 29801658 - 29801765
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||| |||| ||||||  ||||||||| ||||||||| ||||| |  |||||||||||  ||||  |||||||| | |||||||||||||    
T  29801658 gtgtgtttggtttggaagaaaagttgagaagagagaagtaggtaagagagagtatgagaagagagaaaaagatgaaaaatagagtagatttgatgtattg 29801757  T
Q  128 tttggtat 135  Q
    ||||||||    
T  29801758 tttggtat 29801765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 38503514 - 38503621
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||| |||||||||||  ||||||||| ||||||||| ||||| |  |||||||||||  | || ||||||||| | ||||||| |||||    
T  38503514 gtgtgtttggtttggaagagaagttgagaagagagaagtaggtaagagagagtatgagaagagagaaaaagttgagaaatagagtagatttgatatattg 38503613  T
Q  128 tttggtat 135  Q
    ||||||||    
T  38503614 tttggtat 38503621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 11447364 - 11447260
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||| |||||||||||  ||||||||||||||| ||| ||||| ||  ||||||||||  | || ||||||||| | ||||||| |||||    
T  11447364 gtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagagagagtgtagaaagagagaaaaaggtgagaaatagagtagatttgatatattg 11447265  T
Q  128 tttgg 132  Q
    |||||    
T  11447264 tttgg 11447260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 28905673 - 28905566
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||| || || |  |||||||||||  | || |||||| || | |||||||||||||    
T  28905673 gtgtgtttggtttataagagaagttaagaagagagaaataggtaagagagggtatgagaagagagaaaaaggtgagaaatatagtagatttgatgtattg 28905574  T
Q  128 tttggtat 135  Q
    ||||||||    
T  28905573 tttggtat 28905566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 28942068 - 28941961
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||| || || |  |||||||||||  | || |||||| || | |||||||||||||    
T  28942068 gtgtgtttggtttataagagaagttaagaagagagaaataggtaagagagggtatgagaagagagaaaaaggtgagaaatatagtagatttgatgtattg 28941969  T
Q  128 tttggtat 135  Q
    ||||||||    
T  28941968 tttggtat 28941961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 38924051 - 38923949
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||| || ||||||| ||  ||||||||| ||||||||| ||||| |  |||||||||||| |||| ||||||||| | ||||||||| |||    
T  38924051 gtgtgtttggttcgtgagagaagatgagaagagagaagtaggtaagagagagtatgggaagagagaaagagatgagaaatagagtagatttgatgtgttg 38923952  T
Q  128 ttt 130  Q
    |||    
T  38923951 ttt 38923949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 233423 - 233527
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||  |||||||||||  |||||||||||||| || | ||||| |  |||||||||||| | || ||||||||| | |||||| | |||||||    
T  233423 tgtttggtttagaagagaagttgtgaagagagaaataggcaaaagagagtatgagaagagagaaagaggtgagaaatagagtagatttgagggattgttt 233522  T
Q  131 ggtat 135  Q
    |||||    
T  233523 ggtat 233527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 1157117 - 1157010
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |||||||||||  ||||||||||||||| ||| |||  |||  ||||||||||    || ||||||||| | ||||||||||| |    
T  1157117 gtgtgtttggtttagaagagaagttgtgaagagagaaataggtgagagagaagttagtaagagagaaaaatgtgagaaatagagtagatttgatgtatag 1157018  T
Q  128 tttggtat 135  Q
    ||||||||    
T  1157017 tttggtat 1157010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 10830409 - 10830342
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||| ||| ||||||| | | ||||| |||||||||||||| |||||||  |||||||||||    
T  10830409 gtgtgtttggattggaagagaaatagtaaagaaagaaataggtaagagagagtttgagaagagagaaa 10830342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 33960222 - 33960163
Alignment:
Q  37 gtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaag 96  Q
    ||||| |||||||||||| ||||||||| || ||||||||||||||  || |||||||||    
T  33960222 gtttgaaagagaagttgggaagagagaagtatgtaagatagagtttgagatgagagaaag 33960163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 37226163 - 37226096
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||||| ||||||| |||  |||||||||| |||||||| ||||| | |||| |||||||    
T  37226163 gtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaaagagtgtgtgaaaagagaaa 37226096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 39039806 - 39039913
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |||||||| ||  ||||||||||| ||  ||| |||||||  |||||||||||| ||||  |||||||| | ||||||| ||| |    
T  39039806 gtgtgtttggtttagaagagaagatgtgaagagagaaattggagagagagagtttgagaagagagaaagagatgaaaaatagagtaaatttgatttatgg 39039905  T
Q  128 tttggtat 135  Q
    ||| ||||    
T  39039906 tttagtat 39039913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 9780164 - 9780210
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaaga 74  Q
    ||||||||||||| ||||||||||||  |||| ||||||||||||||    
T  9780164 gtgtgtttggtttataagagaagttgtgaagatagaaataggtaaga 9780210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 18515691 - 18515741
Alignment:
Q  85 gaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggtat 135  Q
    |||||||||||| |||| ||||||||| | |||| ||||||||||||||||    
T  18515691 gaagagagaaagagatgagaaatagagtagatttaatgtattgtttggtat 18515741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 9267930 - 9268015
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaa 113  Q
    |||||||||||||| |||| || ||| ||||||| ||||| |||||| |||  ||  |||||||||||  |||| |||||||||||    
T  9267930 gtgtgtttggtttggaagaaaaattgaaaagagaaaaatatgtaagagagatgttgagaagagagaaaaagatgagaaatagagaa 9268015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 24905514 - 24905437
Alignment:
Q  57 agagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggta 134  Q
    ||||||||||| || | | ||||||  |||||||||||||   || ||||||||| | ||||||||||||||||||||    
T  24905514 agagagaaataagtgaaagagagttagtgaagagagaaagaagtgagaaatagagtagatttgatgtattgtttggta 24905437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 287
Target Start/End: Complemental strand, 35467600 - 35467571
Alignment:
Q  258 tttttgtcttcttccctctttcttctcact 287  Q
    ||||||||||||||||||||||||||||||    
T  35467600 tttttgtcttcttccctctttcttctcact 35467571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 4796029 - 4796120
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  4796029 tatccttgataaaacaacattataatttatgattaattgaaaaatcaatggcatattagacatttttgtcttcttccctctttcttctcact 4796120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 25659084 - 25659175
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  25659084 tatctttgataagacaacattataatttatgattaattaaaaaaccaatgacataatagacttttttgtcttcttccctctttcttctcact 25659175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 8170497 - 8170588
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||    
T  8170497 tatccttgataagacaacattataatttatgattaattgaaaaatcaatggcatattagacatttttgtcttctttcctctttcttctcact 8170588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 4795864 - 4795968
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| ||||||||||||||||||||||||||| |||| |||||||  ||||||| |||  |||| ||||||||||| |||||||||||| |||    
T  4795864 tgtttggtttgaaagagaagttggaaagagagaaataggcaagagagagtttgagaagagaaaaaaagatgagaaatagagaagatttgatgtattattt 4795963  T
Q  131 ggtat 135  Q
    |||||    
T  4795964 ggtat 4795968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 8170332 - 8170432
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| ||||||||||||||||||| ||||||| |||| |||||||  |||||||||||  |||| ||||||||||| |||||||||||| |||    
T  8170332 tgtttggtttggaagagaagttggaaagagaaaaataggcaagagagagtttgagaagagagaaaaagatgagaaatagagaagatttgatgtattattt 8170431  T
Q  131 g 131  Q
    |    
T  8170432 g 8170432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 25658916 - 25659023
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||||   ||||||| ||| |||||||||||||||||| | |||||||  |||||||||||| |||  ||||||||||| |||||||||||||    
T  25658916 gtgtgtttggttccgaagagaaattgaaaagagagaaataggtaacagagagtttgcgaagagagaaagtgataagaaatagagaaaatttgatgtattg 25659015  T
Q  128 tttggtat 135  Q
    ||||||||    
T  25659016 tttggtat 25659023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 43360276 - 43360378
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| |||||||||||  ||||||||||||||||||| ||||| |  |||||||||||  |||| ||||||||| | ||||||||||||||||    
T  43360276 tgtttggtttggaagagaagttgtgaagagagaaataggtaagagagagtgtgggaagagagaaatagatgagaaatagagtagatttgatgtattgttt 43360375  T
Q  131 ggt 133  Q
    |||    
T  43360376 ggt 43360378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 23202045 - 23201943
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| |||||||||||  ||||||||||||||||||| ||||| |  |||||||||||  |||| ||||||||| | |||||||||||| |||    
T  23202045 tgtttggtttggaagagaagttgtgaagagagaaataggtaagagagagtgtgggaagagagaaatagatgagaaatagagtagatttgatgtattcttt 23201946  T
Q  131 ggt 133  Q
    |||    
T  23201945 ggt 23201943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 27803283 - 27803178
Alignment:
Q  27 tgtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtatt 126  Q
    ||||||||||||||  ||||||||||| |||||||||||||||| ||| ||||| |  |||||||||||  | || ||||||||| ||||||  ||||||    
T  27803283 tgtgtgtttggtttagaagagaagttgtaaagagagaaataggtgagagagagtgtgggaagagagaaaaaggtgtgaaatagagtatatttagtgtatt 27803184  T
Q  127 gtttgg 132  Q
    ||||||    
T  27803183 gtttgg 27803178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 16660120 - 16660013
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||| || || |  |||||||||||  | || |||||| || | |||||||||||||    
T  16660120 gtgtgtttggtttataagagaagttaagaagagagaaataggtaagagagggtatgagaagagagaaaaaggtgagaaatatagtagatttgatgtattg 16660021  T
Q  128 tttggtat 135  Q
    ||||||||    
T  16660020 tttggtat 16660013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 26940470 - 26940367
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| |||||||||||  |||| |||||||||||||| |||||    ||||||||||||   || ||||||||| | ||||||||||||||||    
T  26940470 tgtttggtttggaagagaagttgtgaagatagaaataggtaagagagagtacgagaagagagaaagatgtgagaaatagagtagatttgatgtattgttt 26940371  T
Q  131 ggta 134  Q
    ||||    
T  26940370 ggta 26940367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 30724590 - 30724657
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||||| ||||||||||| |||||||||||||||| ||| ||||| |  |||||||||||    
T  30724590 gtgtgtttggtttggaagagaagttgtaaagagagaaataggtgagagagagtgtgggaagagagaaa 30724657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 50372776 - 50372883
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  ||||||| |||  ||||||||||||||||| | ||||  ||  ||||||||||| |||  ||||||||| | ||||||||||| |    
T  50372776 gtgtgtttggtttagaagagaatttgtgaagagagaaataggtaatagagagagtaaaaagagagaaagagataagaaatagagtagatttgatgtatgg 50372875  T
Q  128 tttggtat 135  Q
    ||||||||    
T  50372876 tttggtat 50372883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 30720910 - 30720993
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagag 111  Q
    ||||||||||| | ||||| ||||||  ||||||||||||||||||| |||| ||  |||||||||||  |||| |||||||||    
T  30720910 gtgtgtttggtgtataagaaaagttgtgaagagagaaataggtaagagagagattgagaagagagaaaaagatgagaaatagag 30720993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 29733340 - 29733274
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaa 94  Q
    ||||||||||| || |||||||||||  ||||||||||||||||||| ||||| |  ||||||||||    
T  29733340 gtgtgtttggtatggaagagaagttgtgaagagagaaataggtaagagagagtatgggaagagagaa 29733274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 30196367 - 30196250
Alignment:
Q  16 cattacttttatg-tgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaat 114  Q
    ||||| ||||||| ||||||||||| | |||| ||||||  ||||||||| | ||||||| |||||||  |||||||||||    || ||||||||| |     
T  30196367 cattatttttatggtgtgtttggttaggaagataagttgtgaagagagaagttggtaagagagagtttgagaagagagaaaaatgtgagaaatagagtaa 30196268  T
Q  115 atttgatgtattgtttgg 132  Q
    |||||||| |||||||||    
T  30196267 atttgatggattgtttgg 30196250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 46614610 - 46614505
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||| |||||||||  |||||||||| |||||||||||||| | ||| ||||| |   |||||| |||  |||| ||||||||| | ||||||||| |||    
T  46614610 gtgtatttggtttgggagagaagttgtaaagagagaaatagatgagagagagtgtgaaaagagataaatagatgagaaatagagtagatttgatgtgttg 46614511  T
Q  128 tttggt 133  Q
    ||||||    
T  46614510 tttggt 46614505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 4851487 - 4851386
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||| |||||||||||    ||||||||||||||||| ||| | |   ||||||||||   ||| ||||||||| | |||||||||||||    
T  4851487 gtgtgtttggtttgaaagagaagttgtg--gagagaaataggtaagagagaatatgataagagagaaaaatatgagaaatagagtagatttgatgtattg 4851390  T
Q  128 tttg 131  Q
    ||||    
T  4851389 tttg 4851386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 10617373 - 10617321
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagt 80  Q
    ||||||||||| || |||||||||||  ||||||||||||||||||| |||||    
T  10617373 gtgtgtttggtatggaagagaagttgtgaagagagaaataggtaagagagagt 10617321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 2167843 - 2167792
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagag 79  Q
    |||||||||||||| |||||||||||  ||||||||||||||| ||| ||||    
T  2167843 gtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagagagag 2167792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 46085524 - 46085591
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||||  ||||||||||   ||||||||||||||||||| |||  || ||||||||||||    
T  46085524 gtgtgtttggtttagaagagaagttatgaagagagaaataggtaagagagaagttgtgaagagagaaa 46085591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 32154085 - 32154151
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaa 94  Q
    |||||||||| ||||||||||| |||  ||||||||||||||| ||| ||||| |  ||||||||||    
T  32154085 gtgtgtttggattgtaagagaaattgtgaagagagaaataggtgagagagagtatgagaagagagaa 32154151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 17150901 - 17150993
Alignment:
Q  43 aagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggtat 135  Q
    ||||||||||   ||||||||||||||||||| ||||| |  |||||||||||  | || |||||| || | |||||||||| ||||| ||||    
T  17150901 aagagaagttcataagagagaaataggtaagagagagtatgagaagagagaaaaaggtgagaaatatagtagatttgatgtactgtttagtat 17150993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 19067290 - 19067338
Alignment:
Q  85 gaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggt 133  Q
    |||||||||||| |||| ||||||||| | ||||||||| |||||||||    
T  19067290 gaagagagaaagagatgagaaatagagtagatttgatgtgttgtttggt 19067338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 19115180 - 19115228
Alignment:
Q  85 gaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggt 133  Q
    |||||||||||| |||| ||||||||| | ||||||||| |||||||||    
T  19115180 gaagagagaaagagatgagaaatagagtagatttgatgtgttgtttggt 19115228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 43361540 - 43361488
Alignment:
Q  43 aagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||  ||||||||||||||||||| ||||| |  |||||||||||    
T  43361540 aagagaagttgtgaagagagaaataggtaagagagagtgtgggaagagagaaa 43361488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 67951 - 67853
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtatt 126  Q
    |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  67951 gtgtgtttggttcggaagagaagttggaaagagagaaataggtaagagagagtttatgaagagagaaagagatgagaaatagagaagatttgatgtatt 67853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 67782 - 67690
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatc-aatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||| ||||||| |||||| |||||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||    
T  67782 tatcattgataagacaacaatataatttatgattaattaaaaaaaccaacggcataatagacttttttgtcttcttccctctttcttctcact 67690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 2430704 - 2430795
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  2430704 tatccttaataagacaacattataatttatgattaattaaaaaatcaatggcatattagacatttttgtcttcttccctctttcttctcact 2430795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 2430539 - 2430643
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||| |||||||  |||||||||||  |||| ||||||||||| ||||||||||||||||    
T  2430539 tgtttggtttggaagagaaattggaaagagagaaataggcaagagagagtttgagaagagagaaaaagatgagaaatagagaagatttgatgtattgttt 2430638  T
Q  131 ggtat 135  Q
    |||||    
T  2430639 ggtat 2430643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 48402507 - 48402611
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||| | |||||||||||  ||||||||||||||| ||| ||||| || |||||||||||  | || ||||||||| | |||||||||||||    
T  48402507 gtgtgtttggttaggaagagaagttgtgaagagagaaataggtgagagagagtgtaggaagagagaaaaaggtgagaaatagagtagatttgatgtattg 48402606  T
Q  128 tttgg 132  Q
    |||||    
T  48402607 tttgg 48402611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 33989842 - 33989736
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||||| || |||||||||  ||||||||||||||||||| |||||||  |||||||||||  | |  ||||||||| | |||||||| ||||    
T  33989842 gtgtgtttggtttataggagaagttgtgaagagagaaataggtaagagagagtttgagaagagagaaaaaggtaagaaatagagtagatttgatggattg 33989743  T
Q  128 tttggta 134  Q
    |||||||    
T  33989742 tttggta 33989736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 37031206 - 37031312
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||| ||||  |  |||||||||||| |||| |||||| || | |||| ||||||||    
T  37031206 gtgtgtttggtgtagaagagaagttgtaaagagagaaataggtaagagagagagtgagaagagagaaagagatgagaaatatagtaaatttcatgtattg 37031305  T
Q  128 tttggta 134  Q
    |||||||    
T  37031306 tttggta 37031312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 46290439 - 46290530
Alignment:
Q  43 aagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggta 134  Q
    |||||||||||  ||||||||||||||||||| |||||||  |||||||||||| |||| ||||||  | | |||||||| |||||||||||    
T  46290439 aagagaagttgtgaagagagaaataggtaagagagagtttgagaagagagaaagagatgagaaatatggtagatttgatggattgtttggta 46290530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 34996882 - 34996775
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||| |  |||||||||||  ||||||||||||||| ||| |||  |||  |||||||||||   || ||||||||| | |||||||||||||    
T  34996882 gtgtgtttggtatagaagagaagttgtgaagagagaaataggtgagagagaagttagtaagagagaaagaagtgagaaatagagtagatttgatgtattg 34996783  T
Q  128 tttggtat 135  Q
    ||||||||    
T  34996782 tttggtat 34996775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 3563159 - 3563095
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    ||||||||||| |||||||||||  ||||||||||||||||||| ||||| |  |||||||||||    
T  3563159 tgtttggtttggaagagaagttgtgaagagagaaataggtaagagagagtgtgggaagagagaaa 3563095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 10048323 - 10048255
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaag 96  Q
    |||||||||||||  |||||||||||  ||||||||||||||||||| ||||| |  ||||||||||||    
T  10048323 gtgtgtttggtttaaaagagaagttgtgaagagagaaataggtaagagagagtatgagaagagagaaag 10048255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 41816534 - 41816602
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaag 96  Q
    |||||||||||||  |||||||||||  ||||||||||||||||||| ||||| |  ||||||||||||    
T  41816534 gtgtgtttggtttaaaagagaagttgtgaagagagaaataggtaagagagagtatgagaagagagaaag 41816602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 41204030 - 41203963
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||| ||||||| |||||||||||  ||||||||||||||||||| |||||||   ||||||||||    
T  41204030 gtgtgtgtggtttggaagagaagttgtgaagagagaaataggtaagagagagtttgaaaagagagaaa 41203963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 11315573 - 11315507
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaa 94  Q
    |||||||||||||| |||||||||||  ||||||||||||||| ||| |||| ||  ||||||||||    
T  11315573 gtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagagagagattgagaagagagaa 11315507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 11202362 - 11202466
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||||| ||  ||||||||  ||||||||||||| ||||  |||||||  |||||||||||  | |  ||||||||| | |||||||| ||||    
T  11202362 gtgtgtttggtttatagcagaagttgtgaagagagaaatagataag--agagtttgagaagagagaaaaaggtaagaaatagagtagatttgatggattg 11202459  T
Q  128 tttggta 134  Q
    |||||||    
T  11202460 tttggta 11202466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 20383973 - 20383866
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |||||||||||  |||||||||||| |||||| | |  || ||||||||||||  | || ||||||||| | |||||||   |||    
T  20383973 gtgtgtttggtttagaagagaagttgtgaagagagaaatatgtaagagaaaaattgtgaagagagaaaaaggtgagaaatagagtagatttgataggttg 20383874  T
Q  128 tttggtat 135  Q
    ||||||||    
T  20383873 tttggtat 20383866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 45657826 - 45657775
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagag 79  Q
    |||||||||||||| |||||||||||  ||||||||||||||| ||| ||||    
T  45657826 gtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaaagag 45657775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 43051737 - 43051843
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||||| |||||||| |||  ||||||||| || ||| || ||||| || |||||||||||  | || |||||| || | ||||||  |||||    
T  43051737 gtgtgtttggtttataagagaaattgtgaagagagaagtatgtaggagagagtataggaagagagaaataggtgagaaatatagtagatttgacatattg 43051836  T
Q  128 tttggta 134  Q
    |||||||    
T  43051837 tttggta 43051843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 11749145 - 11749250
Alignment:
Q  29 tgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgt 128  Q
    |||||||||| | || ||||||||| || || |||||||| ||||| |||||||  ||||| |||||  |||  |||||| || | |||||||| |||||    
T  11749145 tgtgtttggtctataggagaagttgtaacgaaagaaatagataagagagagtttgagaagaaagaaaaagataagaaataaagtagatttgatggattgt 11749244  T
Q  129 ttggta 134  Q
    ||||||    
T  11749245 ttggta 11749250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 22643918 - 22643966
Alignment:
Q  86 aagagagaaagggatgcgaaatagagaatatttgatgtattgtttggta 134  Q
    ||||||||||  |||| ||||||||| | ||||||||||||||||||||    
T  22643918 aagagagaaaaagatgagaaatagagtagatttgatgtattgtttggta 22643966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 5077246 - 5077337
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  5077246 tatccttgataagacaacatcataatttatgattaattaaaaaatcaatgacatattagacttttttgtcttcttccctctttcttctcact 5077337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 39676231 - 39676321
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatattt 118  Q
    ||||||||||||   |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||| ||||    
T  39676231 gtgtgtttggttcagaagagaagttggaaagagagaaataggtaagagagagtttgtgaagagagaaagtgatgagaaatagagaagattt 39676321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 5077095 - 5077201
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||| | ||||||||||||||||||||||||| |||| |||||||  |||||||||||   ||| ||||| ||||| |||||||||||||    
T  5077095 gtgtgtttggtttgga-gagaagttggaaagagagaaataggcaagagagagtttgagaagagagaaacatatgagaaattgagaaaatttgatgtattg 5077193  T
Q  128 tttggtat 135  Q
    ||||||||    
T  5077194 tttggtat 5077201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 725217 - 725111
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||||| || |||||||||  ||||||||||||||||||| |||||||  |||||||||||  | |  ||||||||| | |||||||| ||||    
T  725217 gtgtgtttggtttataggagaagttgtgaagagagaaataggtaagagagagtttgagaagagagaaaaaggtaagaaatagagtagatttgatggattg 725118  T
Q  128 tttggta 134  Q
    |||||||    
T  725117 tttggta 725111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 38376571 - 38376465
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||| |  |||||||||||  ||||||||||||||||||| |||||||   ||||||||||| | || ||||||| | | |||||||| ||||    
T  38376571 gtgtgtttggtgtagaagagaagttgtgaagagagaaataggtaagagagagtttgaaaagagagaaagaggtgagaaatagggtagatttgatggattg 38376472  T
Q  128 tttggta 134  Q
    |||||||    
T  38376471 tttggta 38376465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 2020131 - 2020242
Alignment:
Q  23 tttatgtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatg 122  Q
    |||| ||||| |||||||  |||||||| ||  ||||||||||||||| ||| |||||||  |||||||||||| |||| ||||||||| | || ||||     
T  2020131 tttaggtgtgcttggtttagaagagaagatgtgaagagagaaataggtgagagagagtttgagaagagagaaagagatgagaaatagagtagatctgatt 2020230  T
Q  123 tattgtttggta 134  Q
    ||| ||||||||    
T  2020231 tatggtttggta 2020242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 18460317 - 18460234
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagag 111  Q
    |||||||| ||||| |||| |||||| ||| |||||||||||||||| ||||| |||||| ||||||||  ||| |||||||||    
T  18460317 gtgtgtttcgtttgaaagaaaagttgtaaatagagaaataggtaagagagagtatatgaaaagagaaagatatgagaaatagag 18460234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 27337190 - 27337293
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| |||||||||||  ||||||||||||||| ||| ||||| |  ||||||||||||   || |||||||   | ||||||||||||||||    
T  27337190 tgtttggtttggaagagaagttgtgaagagagaaataggtgagagagagtatgagaagagagaaagatgtgagaaataggatagatttgatgtattgttt 27337289  T
Q  131 ggta 134  Q
    ||||    
T  27337290 ggta 27337293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 3207213 - 3207316
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| |||||||||||  ||||||||||||||| ||| ||||| |  ||||||||| |    |  ||||||||| | ||||||||||||||||    
T  3207213 tgtttggtttggaagagaagttgtgaagagagaaataggtgagagagagtatgagaagagagagaaatgttagaaatagagtagatttgatgtattgttt 3207312  T
Q  131 ggta 134  Q
    ||||    
T  3207313 ggta 3207316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 9225237 - 9225130
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |||||||||||| ||||||||||||  | ||| ||||| |  |||||||||||| |||| ||||||| | | |||||||   |||    
T  9225237 gtgtgtttggtttagaagagaagttgggaagagagaaataaatgagagagagtatgggaagagagaaagagatgagaaatagtgtagatttgataggttg 9225138  T
Q  128 tttggtat 135  Q
    ||||||||    
T  9225137 tttggtat 9225130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 32864841 - 32864908
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||| ||| ||||||| | | |||||||||||||||||||| |||||||  |||||||||||    
T  32864841 gtgtgtttggattggaagagaaatagtaaagagagaaataggtaagagagagtttgagaagagagaaa 32864908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 4843506 - 4843400
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  ||||||| |||  |||||||||||| || ||| ||||| |  |||||||||||| |||| |||||| || | ||||||||  |||    
T  4843506 gtgtgtttggtttagaagagaaattgtgaagagagaaataagtgagagagagtatgggaagagagaaagagatgagaaataaagtagatttgatgggttg 4843407  T
Q  128 tttggta 134  Q
    |||||||    
T  4843406 tttggta 4843400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 33618095 - 33618172
Alignment:
Q  57 agagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggta 134  Q
    |||||||||||||| ||| ||| | || |||||||||||| | || ||||||||| | |||||||| |||||||||||    
T  33618095 agagagaaataggtgagagagaatataggaagagagaaagaggtgagaaatagagtagatttgatggattgtttggta 33618172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 41322103 - 41322038
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagaga 93  Q
    |||||||||||||  |||||||||||  ||||||||||||||||||| ||||| |  |||||||||    
T  41322103 gtgtgtttggtttagaagagaagttgtgaagagagaaataggtaagagagagtatgagaagagaga 41322038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 42578616 - 42578514
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||  |||||||||||  ||||||||||||||||||  ||||| |  |||||||||||| | || ||||||||| |  ||||| | |||||||    
T  42578616 tgtttggtttagaagagaagttgtgaagagagaaataggtaag--agagtatgagaagagagaaagaggtgagaaatagagtagctttgagggattgttt 42578519  T
Q  131 ggtat 135  Q
    |||||    
T  42578518 ggtat 42578514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 3462611 - 3462703
Alignment:
Q  43 aagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggtat 135  Q
    |||||||||||  |||||||||||| |||||| ||||| |  |||||||||||  | || ||||||||  | |||||||||| ||||||||||    
T  3462611 aagagaagttgtgaagagagaaatatgtaagagagagtatgagaagagagaaaaaggtgagaaatagaatagatttgatgtagtgtttggtat 3462703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 9273105 - 9272998
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||| |||  |||||||||||| ||||||||||||  | ||| ||||| |  |||||||||||| |||| ||||||| | | ||||||||  ||     
T  9273105 gtgtgtttgatttagaagagaagttgggaagagagaaataaatgagagagagtatgggaagagagaaagagatgagaaatagtgtagatttgatgggtta 9273006  T
Q  128 tttggtat 135  Q
    ||||||||    
T  9273005 tttggtat 9272998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 10913454 - 10913520
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaa 94  Q
    ||||||||||| || |||||||||||  ||||||||||||||| ||| |||| ||  ||||||||||    
T  10913454 gtgtgtttggtgtggaagagaagttgtgaagagagaaataggtgagagagagattgagaagagagaa 10913520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 5590631 - 5590527
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    |||||||||||  ||||||||||  |||||||||||| || ||| ||||| |   ||||||||||| | || ||||||||  | |||| | |||||||||    
T  5590631 tgtttggtttgagagagaagttgtgaagagagaaataagtgagagagagtatggaaagagagaaagaggtgagaaatagaatagatttaaggtattgttt 5590532  T
Q  131 ggtat 135  Q
    |||||    
T  5590531 ggtat 5590527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 28124 - 28020
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||  ||| ||||||||||| |||||||||||||    
T  28124 gtgtgtttggttcggaagagaagttgaaaagagagaaataggtaagagagagtttgtgaagagagaaagtaatgagaaatagagaagatttgatgtattg 28025  T
Q  128 tttgg 132  Q
    |||||    
T  28024 tttgg 28020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 27956 - 27864
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagactt-ttttgtcttcttccctctttcttctcact 287  Q
    |||||||||||| ||||||||||||||||| |||||||||| || |||| ||||||||||||| |||||||||||| || |||||||||||||    
T  27956 tatccttgataagacaacattataatttataattaattaaataaccaatggcataatagactttttttgtcttctttcccctttcttctcact 27864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 49233253 - 49233162
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||||||||||| |||||||||||||||||||| |||||||||| |||  |||||||| |||||||||||||||||||||||||||||||||    
T  49233253 tatccttgataagacaacattataatttatgatcaattaaaaaaccaacggcataataaacttttttgtcttcttccctctttcttctcact 49233162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 6447016 - 6447122
Alignment:
Q  29 tgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgt 128  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||  |||| |||||||| || ||||||||||||||    
T  6447016 tgtgtttggttcggaagagaagttgaaaagagagaaataggtaagagagagtttgtgaagagagaaaatgatgagaaatagaaaagatttgatgtattgt 6447115  T
Q  129 ttggtat 135  Q
    |||||||    
T  6447116 ttggtat 6447122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 53922075 - 53921983
Alignment:
Q  43 aagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggtat 135  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||  |||||||| || |||||||||||||||||||||    
T  53922075 aagagaagttggaaagagagaaataggttagagagagtttgtgaagagagaaagtgataagaaatagaaaagatttgatgtattgtttggtat 53921983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 49889325 - 49889416
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttcttccctctttcttctcact 287  Q
    |||| ||||||| |||||||||||||||||||||||||||||||| |||  |||| ||||  ||||||||||||||||||||||||||||||    
T  49889325 tatctttgataagacaacattataatttatgattaattaaaaaattaatgacatattagatatttttgtcttcttccctctttcttctcact 49889416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 49233421 - 49233314
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||| | |||||||||| |||| ||||||||| |||||| ||||||| ||||||| ||||  |||| ||||||||||| ||||||||||||     
T  49233421 gtgtgtttggttcggaagagaagttagaaaaagagaaataagtaagagagagtttgtgaagagggaaaatgatgagaaatagagaagatttgatgtattc 49233322  T
Q  128 tttggtat 135  Q
    ||||||||    
T  49233321 tttggtat 49233314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 45782005 - 45781905
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||   ||| |||||  | || ||||||||||||||||    
T  45782005 tgtttggtttggaagagaagttggaaagagagaaatagataagagagagtttttgaagagagaaaataatgagaaatgtaaaagatttgatgtattgttt 45781906  T
Q  131 g 131  Q
    |    
T  45781905 g 45781905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 53921922 - 53921833
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagactttttt-gtcttcttccctctttcttctcact 287  Q
    |||||||||||| |||||||||||||||||||||   ||||||| ||||  |||| ||||||||||| |||||||||||||||||||||||||    
T  53921922 tatccttgataagacaacattataatttatgatt---taaaaaaccaatgacatattagactttttttgtcttcttccctctttcttctcact 53921833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 32208258 - 32208364
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||| |||| ||||||||||||  ||||||||||||||||||| ||||  |  |||||||||||  |||| ||||||||| | ||||||||||| |    
T  32208258 gtgtgtttagtttataagagaagttgtgaagagagaaataggtaagagagagagtgagaagagagaaaaagatgagaaatagagtagatttgatgtatgg 32208357  T
Q  128 tttggta 134  Q
    |||||||    
T  32208358 tttggta 32208364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 45781853 - 45781779
Alignment:
Q  196 tatccttgataaaacaacattataatttatgattaattaaaaaatcaatagcataatagacttttttgtcttctt 270  Q
    |||||||||||| | ||||||| ||||||||||||||||||||| ||||  ||||||| ||||||||||||||||    
T  45781853 tatccttgataagataacattacaatttatgattaattaaaaaaccaatgacataataaacttttttgtcttctt 45781779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 30658285 - 30658216
Alignment:
Q  26 atgtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||||| | |||||| |||||||||||    
T  30658285 atgtgtgtttggtttcgaagagaagttggaaagacagaaataggtaagacaaagtttaagaagagagaaa 30658216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 56051164 - 56051267
Alignment:
Q  31 tgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgttt 130  Q
    ||||||||||| |||||||||||  ||||||||||||||| ||| ||||| |  ||||||||||||   || ||||||| | | ||||||||||||||||    
T  56051164 tgtttggtttggaagagaagttgtgaagagagaaataggtgagagagagtatgagaagagagaaagatgtgagaaatagggtagatttgatgtattgttt 56051263  T
Q  131 ggta 134  Q
    ||||    
T  56051264 ggta 56051267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 8281628 - 8281560
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaag 96  Q
    |||||||||||||| ||||||||||||||| |||||| ||| ||||| |||||||  ||||||||||||    
T  8281628 gtgtgtttggtttgaaagagaagttggaaaaagagaagtagataagaaagagtttgagaagagagaaag 8281560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 25052387 - 25052282
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||| | |||||||||||  ||||||||||||||||||| ||||| || ||||||||||||   || |||||| || | ||||||||  |||    
T  25052387 gtgtgtttggttgg-aagagaagttgtgaagagagaaataggtaagagagagtataagaagagagaaagaagtgagaaataaagtagatttgatgggttg 25052289  T
Q  128 tttggta 134  Q
    |||||||    
T  25052288 tttggta 25052282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 34413119 - 34413003
Alignment:
Q  18 ttacttttatgtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatt 117  Q
    ||||| ||| ||||||||||||   |||||||||||  ||||||||||||||||||| ||||     |||||||||||  ||||  ||||| || | |||    
T  34413119 ttactcttaggtgtgtttggttaagaagagaagttgtgaagagagaaataggtaagagagagaaagggaagagagaaaaagatgaaaaataaagtagatt 34413020  T
Q  118 tgatgtattgtttggta 134  Q
    |||||||||||||||||    
T  34413019 tgatgtattgtttggta 34413003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 6329479 - 6329373
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||| |||| |||||||||||  ||||||||| ||||||||| | ||| |  |||||||||||  |||  ||||||||| | ||||||| |||||    
T  6329479 gtgtgtttgatttg-aagagaagttgagaagagagaagtaggtaagagaaagtatgagaagagagaaaaagataagaaatagagtagatttgatatattg 6329381  T
Q  128 tttggtat 135  Q
    ||||||||    
T  6329380 tttggtat 6329373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 50381862 - 50381969
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||||||| ||||||||||||  |||||| |||||||||||| |||  ||  |||||||||||  | || ||||| ||| | ||||||||  |||    
T  50381862 gtgtgtttggtttataagagaagttgtgaagagaaaaataggtaagagagaagttgagaagagagaaaaaggtgagaaattgagtagatttgatgggttg 50381961  T
Q  128 tttggtat 135  Q
    ||||||||    
T  50381962 tttggtat 50381969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 41326547 - 41326653
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |||||||||||  |||||||||||| || ||| ||||| |  ||||||||||||  ||| ||| ||||| | ||||||||  |||    
T  41326547 gtgtgtttggtttagaagagaagttgtgaagagagaaataagtgagagagagtatgggaagagagaaagaaatgagaattagagtagatttgatgggttg 41326646  T
Q  128 tttggta 134  Q
    |||||||    
T  41326647 tttggta 41326653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 51075212 - 51075106
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||| ||||||||||| |||||||||||  ||| ||| |||| ||  ||||||||||     || ||||||||| | |||||||||| ||    
T  51075212 gtgtgtttggtttgaaagagaagttgtaaagagagaaagtggtgagagagagattgagaagagagaattatgtgagaaatagagtagatttgatgtactg 51075113  T
Q  128 tttggta 134  Q
    |||||||    
T  51075112 tttggta 51075106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 11671952 - 11671848
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa--gggatgcgaaatagagaatatttgatgtat 125  Q
    ||||||||||||   |||||||||||  |||||||||||||||||||  ||||||  |||||||||||  ||||   ||||||||| | |||||||| ||    
T  11671952 gtgtgtttggttaagaagagaagttgtgaagagagaaataggtaaga--gagtttgagaagagagaaaaaggga---gaaatagagtagatttgatgaat 11671858  T
Q  126 tgtttggtat 135  Q
    ||||||||||    
T  11671857 tgtttggtat 11671848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 44937019 - 44937124
Alignment:
Q  29 tgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgt 128  Q
    ||||||||||||  |||||||||||  |||||||||||| || |||  |||| |  |||||||||||| |||| |||||| || | ||||||||  ||||    
T  44937019 tgtgtttggtttagaagagaagttgtgaagagagaaataagtgagagggagtatgggaagagagaaagagatgagaaatatagtagatttgatgggttgt 44937118  T
Q  129 ttggta 134  Q
    ||||||    
T  44937119 ttggta 44937124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 52399395 - 52399302
Alignment:
Q  42 taagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggtat 135  Q
    ||||||||||||  |||||||||||| |||||| ||||| |  |||||||||||  | || ||||||||  | |||||||||| ||||||||||    
T  52399395 taagagaagttgtgaagagagaaataagtaagagagagtatgagaagagagaaaaaggtgagaaatagaatagatttgatgtagtgtttggtat 52399302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 30658105 - 30658065
Alignment:
Q  204 ataaaacaacattataatttatgattaattaaaaaatcaat 244  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  30658105 ataagacaacattataatttatgattaattaaaaaaccaat 30658065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 33633070 - 33633175
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  |||||||||||| ||||||||||||  | ||| ||||| |  |||||||||||  |||| ||||||| | | ||||||||  |||    
T  33633070 gtgtgtttggtttagaagagaagttgggaagagagaaataaatgagagagagtatgggaagagagaaa--gatgagaaatagtgtagatttgatgggttg 33633167  T
Q  128 tttggtat 135  Q
    ||||||||    
T  33633168 tttggtat 33633175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 34841034 - 34841109
Alignment:
Q  56 aagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttg 131  Q
    ||||||||||||||| ||| |||||||  |||||||||||  |||| ||||||||| | ||||||||  |||||||    
T  34841034 aagagagaaataggtgagagagagtttgagaagagagaaatagatgagaaatagagtagatttgatgggttgtttg 34841109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 53062072 - 53062139
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||||  |||||||||||  |||||||||||| |||||| ||||| |  |||||||||||    
T  53062072 gtgtgtttggtttagaagagaagttgtgaagagagaaataagtaagagagagtatgagaagagagaaa 53062139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 53448134 - 53448027
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    ||||||||| |||| ||||||  |||  ||||||||| | |  |||| ||||| |  |||||||||||| |||| ||||||||| | |||| ||||||||    
T  53448134 gtgtgtttgatttggaagagagattgtgaagagagaagttgccaagagagagtatgagaagagagaaagagatgagaaatagagtagatttaatgtattg 53448035  T
Q  128 tttggtat 135  Q
    ||||||||    
T  53448034 tttggtat 53448027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 34411325 - 34411371
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaaga 74  Q
    ||||||||||| || |||||||||||  |||||||||||||||||||    
T  34411325 gtgtgtttggtatggaagagaagttgtgaagagagaaataggtaaga 34411371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 6447200 - 6447240
Alignment:
Q  247 cataatagacttttttg-tcttcttccctctttcttctcac 286  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  6447200 cataatagacttttttggtcttcatccctctttcttctcac 6447240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 35106307 - 35106239
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaag 96  Q
    |||||||||||||   ||||||||||  |||||| || ||||||||| |||||||  ||||||||||||    
T  35106307 gtgtgtttggtttaggagagaagttgtgaagagataattaggtaagagagagtttgagaagagagaaag 35106239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 11945 - 11840
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||| | |||||||||||  ||||||||||||||||||| ||||| || ||||||||||||   || ||||||||| | ||||||||  |||    
T  11945 gtgtgtttggttgg-aagagaagttgtgaagagagaaataggtaagagagagtataagaagagagaaagaagtgagaaatagagtagatttgatgggttg 11847  T
Q  128 tttggta 134  Q
    |||||||    
T  11846 tttggta 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 32818743 - 32818832
Alignment:
Q  46 agaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggtat 135  Q
    ||||||||  ||||||||||||||||||| ||||| |  |||||||||||| || | ||||||||| | |||| ||| ||||||||||||    
T  32818743 agaagttgtgaagagagaaataggtaagagagagtatgagaagagagaaagagaagagaaatagagtagatttaatggattgtttggtat 32818832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 3711429 - 3711496
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||||| |||||||||||  |||||||||| |||| ||| ||||| |  |||||||||||    
T  3711429 gtgtgtttggtttggaagagaagttgtgaagagagaaagaggtgagagagagtatgggaagagagaaa 3711496  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 251800 - 251842
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggt 70  Q
    |||||||||||||| |||||||||||  |||||||||||||||    
T  251800 gtgtgtttggtttggaagagaagttgtgaagagagaaataggt 251842  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 9244765 - 9244857
Alignment:
Q  43 aagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattgtttggtat 135  Q
    |||||||||||  ||||||||||||||||||| |||  ||  |||||||||||  | || ||||| ||| | ||||||||  |||||||||||    
T  9244765 aagagaagttgtgaagagagaaataggtaagagagaagttgggaagagagaaaaaggtgagaaattgagtagatttgatgagttgtttggtat 9244857  T

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Target: scaffold0380 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 48 - 114
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaa 94  Q
    |||||||||||||| |||||||||||  ||||||||||||||| ||| ||||| |  ||||||||||    
T  48 gtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagagagagtatgagaagagagaa 114  T

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Target: scaffold0100 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 44390 - 44495
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaagggatgcgaaatagagaatatttgatgtattg 127  Q
    |||||||||||||  ||| |||||||  ||||||||||||||| ||| |||||||  ||||||||||     || ||||||||  | |||||||||||||    
T  44390 gtgtgtttggtttagaagtgaagttgtgaagagagaaataggtgagagagagtttgagaagagagaagtatgtgagaaatagaataaatttgatgtattg 44489  T
Q  128 tttggt 133  Q
    ||||||    
T  44490 tttggt 44495  T

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Target: scaffold0072 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 46515 - 46582
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||||| |||||||||||  ||||||||||||||| ||| ||||  |  |||||||||||    
T  46515 gtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagagagagagtgagaagagagaaa 46582  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 1487 - 1554
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggtaagatagagtttatgaagagagaaa 95  Q
    |||||||||||||  |||||||||||  |||||| |||||||||||| ||||| |  |||||||||||    
T  1487 gtgtgtttggtttagaagagaagttgtgaagagataaataggtaagagagagtatgagaagagagaaa 1554  T

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Target: scaffold0069 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 35962 - 36004
Alignment:
Q  28 gtgtgtttggtttgtaagagaagttggaaagagagaaataggt 70  Q
    |||||||||||||| |||||||||||  |||||||||||||||    
T  35962 gtgtgtttggtttggaagagaagttgtgaagagagaaataggt 36004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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