View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18493_low_14 (Length: 290)
Name: NF18493_low_14
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 32576541 - 32576282
Alignment:
| Q |
1 |
aagatggttatatttgatcttgtatatgaaatgtcaaaaaggacaaaaatagctagttctcctaaataattataacatttggctctatgaaatgtaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32576541 |
aagatggttatatttgatcttgtatatgaaatgtcaaaaaggacaaaaatagctagttctcctaaataattataacatttggctctatcaaaa------- |
32576449 |
T |
|
| Q |
101 |
ccttaaacataggaaccaaagctaaaccacatttaaaaaaccagattcttctcttgagttgcatttataatacagtaagagattaatggctgtaaataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32576448 |
--------ataggaaccaaagctaaaccacatttaaaaaaccagattcttctcttgagttgcatttataatacagtaagagattaatggctgtaaataaa |
32576357 |
T |
|
| Q |
201 |
ctcagtgtttttacttgtactatgacagctcttgtgcactgtttggccgaagagtatgacgttgcatatgaatta |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32576356 |
ctcagtgtttttacttgtactatgacagctcttgtgcactgtttggccgaagagtatgaccttgcatatgaatta |
32576282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 25 - 276
Target Start/End: Complemental strand, 32571221 - 32570971
Alignment:
| Q |
25 |
tatgaaatgtcaaaaaggacaaaaatagctagttctcctaaataattataacatttggctctatgaaatgtaacaaccttaaacataggaaccaaagcta |
124 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||| ||||||||| | ||||||| || ||||||| |||||||| ||||||||||||| ||| | |
|
|
| T |
32571221 |
tatgaattgtcaaaaaagacaaacatagctagttttcctaaata-tgataacatcaggtggtatgaaaaataacaaccctaaacataggaacaaaacttg |
32571123 |
T |
|
| Q |
125 |
aaccacatttaaaaaaccagattcttctcttgagttgcatttataatacagtaagagattaatggctgtaaataaactcagtgtttt---tacttgtact |
221 |
Q |
| |
|
|| ||||| |||||| ||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| |||| ||||||| || ||||||| |
|
|
| T |
32571122 |
aatcacatataaaaa-ccagactcttctctcgagttgcatttatattacagtaagagaactatggctgtaaattaact--gtgttttaattagttgtact |
32571026 |
T |
|
| Q |
222 |
atgacagctcttgtgcactgtttggccgaagagtatgacgttgcatatgaattat |
276 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
32571025 |
atgacagctcctgtgcactgtttggccgaagggtgggactttgcatatgaattat |
32570971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32613015 - 32612974
Alignment:
| Q |
1 |
aagatggttatatttgatcttgtatatgaaatgtcaaaaagg |
42 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32613015 |
aagatggttatctttgatcttgtatatgaaatgtcaaaaagg |
32612974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University