View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18493_low_16 (Length: 246)
Name: NF18493_low_16
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_low_16 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 163201 - 162985
Alignment:
| Q |
12 |
agcataggtgattaggacaccctttgttagatgattcctgctgttgtatgtgtaattgcataattggatctcttactaacttcaagaagaaggcaccaaa |
111 |
Q |
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| T |
163201 |
agcataggtgattaggacaccctttgttagatgattcctgctgttgtatgtgtaattgcataattggatctcttactaacttcaagaagaaggcaccaaa |
163102 |
T |
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| Q |
112 |
atccatgggcactacgatgttagagtcgatgtcaagctaattacaaggctatctagagccatggaattagaagtgttcccaagagtatcagggtatgcat |
211 |
Q |
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| T |
163101 |
atccatgggcactacgatgttagagtcgatgtcaagctaattacaaggttatctagagccatggaattagaagtgttcccaagagtatcagggtatgcat |
163002 |
T |
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| Q |
212 |
tgctcgcaagagaaacg |
228 |
Q |
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| T |
163001 |
tgctcgcaagagaaacg |
162985 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 34508258 - 34508145
Alignment:
| Q |
109 |
aaaatccatgggcacta-cgatgttagagtcgatgtcaagctaattacaaggctatctagagccatggaattagaagtgttcccaagagtatcagggtat |
207 |
Q |
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|||| |||||||||||| |||||||||||| || || ||| | | |||||||||||| |||||| ||||| |||||||| || | ||| ||||||||| |
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| T |
34508258 |
aaaagccatgggcactaacgatgttagagttgacgttaagttga--acaaggctatctggagccagggaatcagaagtgtaccaaggaggatcagggtac |
34508161 |
T |
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| Q |
208 |
gcattgctcgcaagag |
223 |
Q |
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| T |
34508160 |
gcattgctcgcaagag |
34508145 |
T |
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