View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18493_low_2 (Length: 594)
Name: NF18493_low_2
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 125 - 575
Target Start/End: Complemental strand, 32798020 - 32797570
Alignment:
| Q |
125 |
ctcacctttttgccacggcagtgcaaccacgataaagcttctgattaggatcagacaaaatatgcgcatgacaatacttagtaagagccatagctttggt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32798020 |
ctcacctttttgccacggcagtgcaaccacgataaagcttctgattaggatcagacaaaatatgcgcatgacaatacttagtaagagccatagctttggt |
32797921 |
T |
|
| Q |
225 |
cttacagccagtataagcacaccgaacaaaatcatcaccattatcaaaagcaccagcagcagaagcgttacccgaatcccttacaccgtttgaatttctt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32797920 |
cttacagccagtataagcacaccgaacaaaatcatcaccattatcaaaagcaccagcagcagaagcgttacccgaatcccttacaccgtttgaatttctt |
32797821 |
T |
|
| Q |
325 |
tcttcatcttctttgaacggactccttccataagtccagtaatactctctgtacttagccttaagctcttccattaacgcccagtaatgacctcggtaac |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32797820 |
tcttcatcttctttgaacggactccttccataagtccagtaatactctctgtacttagccttaagctcttccattaacgcccagtaatgacctcggtaac |
32797721 |
T |
|
| Q |
425 |
agcgagagagctgtctgacacggcggaggcggcgaacgaggacctcgcggcgggttaagacggaggaggccgcgagtgctaagtcttcgtcggcgccgtc |
524 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32797720 |
agcgagagagttgtctgacacggcggaggcggcgaacgaggacctcgcggcgggttaagacggaagaggccgcgagtgctaagtcttcgtcggcgccgtc |
32797621 |
T |
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| Q |
525 |
gattgtcatcggcgcaatttgttgcggtggttgttgttgagagtcttccat |
575 |
Q |
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| T |
32797620 |
gattgtcatcggcgcaatttgttgcggtggttgttgttgagagtcttccat |
32797570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 32798121 - 32798069
Alignment:
| Q |
16 |
caattatccatatttgttattaatcaaaaatttctacatcacacaacattaca |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32798121 |
caattatccatatttgttattaatcaaaaatttctacatcacacaacattaca |
32798069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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