View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18493_low_4 (Length: 549)
Name: NF18493_low_4
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 29661762 - 29661391
Alignment:
| Q |
1 |
acaaaccaattgattcattttggttcagtagcatcgacataaattaaaggtgtgtctggtgtccaatgcatgtgactactacatagtagaatcacttata |
100 |
Q |
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| T |
29661762 |
acaaaccaattgattcattttggttcagtagcatcgacataaattaaaggtgtgtctggtgtccaatgcatgtggctactacatagtagaatcacttata |
29661663 |
T |
|
| Q |
101 |
ttttttcaaattattagcaatgtttacgtgtcaatgtttgttttatgtgtgcatctgtatcagtgcctcgtagccgctaatcaatcagattcgatctaca |
200 |
Q |
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| T |
29661662 |
ttttttcaaattattagcaatgtttacgtgtcaatgttggttttatgtgtgcatctgtatcagtgcctcgtagccgctaatcaatcagattcgatctaca |
29661563 |
T |
|
| Q |
201 |
atttacacaatcttgctttatatggtggttttagtcctggtttttgaagtcatggaaattcattctaaatgaaccttgttaggtcatgtaatgagctagg |
300 |
Q |
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| T |
29661562 |
atttacacaatcttgctttatatggtggttttagtcctggtttttgaagtcatggaaattcattctaaatgaaccttgttaggtcatgtaatgagctagg |
29661463 |
T |
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| Q |
301 |
cagt--taatgttgttggtctaagtggagatggtaattataagcttatgatttgttctgtttgttgatgata |
370 |
Q |
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| T |
29661462 |
cagttataatgttgttggtctaagtggagatgataattataagcttatgatttcttctgtttgttgatgata |
29661391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 400 - 539
Target Start/End: Complemental strand, 29661391 - 29661252
Alignment:
| Q |
400 |
aattttgggaaattttcataggttacatggaattttaactagttcgaagttatgatgaactagatgaaattcaaagccaaatttcaaactggctgtaacc |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |
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| T |
29661391 |
aattttgggaaattttcataggttacatggaattttaactagttcgaagttatgatgaagtagatgaaattcaaagccaaatttcaaacttgctctaacc |
29661292 |
T |
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| Q |
500 |
attggacttagataattccagcattatttttgttgttgat |
539 |
Q |
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| T |
29661291 |
attggacttagataactccagcattatttgtgttgttgat |
29661252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 12224244 - 12224204
Alignment:
| Q |
101 |
ttttttcaaattattagcaatgtttacgtgtcaatgtttgt |
141 |
Q |
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| T |
12224244 |
ttttttcaaattattagctatgttggcgtgtcaatgtttgt |
12224204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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