View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18493_low_5 (Length: 428)

Name: NF18493_low_5
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18493_low_5
NF18493_low_5
[»] chr1 (3 HSPs)
chr1 (243-401)||(16514569-16514726)
chr1 (1-86)||(16514320-16514405)
chr1 (137-210)||(16514456-16514529)
[»] chr2 (1 HSPs)
chr2 (286-352)||(35874098-35874164)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 243 - 401
Target Start/End: Original strand, 16514569 - 16514726
Alignment:
Q  243 tgatgtggaactacagttttcttagttttttgtaatgaaaatgtaggatccatggtggaatcctgcagttgaggagcaagcaataatgaggattcatcgt 342  Q
    |||||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16514569 tgatgtgggactacaattttctgagtttt-tgtaatgaaaatgtaggatccatggtggaatcctgcagttgaggagcaagcaataatgaggattcatcgt 16514667  T
Q  343 attggacaaaagcgaagggttactgtaagaagattcatcgtgaaggttggctaattcat 401  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  16514668 attgggcaaaagcgaagggttactgtaagaagattcattgtgaaggttagctaattcat 16514726  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 16514320 - 16514405
Alignment:
Q  1 ttctgaaagaatttaacgaaacaaaagagaaaagggtaagtaaaatcaagttgaactgtatcattttcaatgaactttagcacaac 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16514320 ttctgaaagaatttaacgaaacaaaagagaaaagggtaagtaaaatcaagttgaactgtatcattttcaatgaactttagcacaac 16514405  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 16514456 - 16514529
Alignment:
Q  137 ttgatgtcactaaaagctggtggtgttggcttgaacttgacagcagcctcaaatgttttcctaatggtatgtat 210  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  16514456 ttgatgtcactaaaagctggtggtgtaggcttgaacttgactgcagcctcaaatgttttcctaatggtatgtat 16514529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 35874098 - 35874164
Alignment:
Q  286 taggatccatggtggaatcctgcagttgaggagcaagcaataatgaggattcatcgtattggacaaa 352  Q
    |||||||||||||||||||| || |||||||| |||||  | ||| | |||||||| ||||||||||    
T  35874098 taggatccatggtggaatccagctgttgaggaacaagctgttatgcgtattcatcgcattggacaaa 35874164  T

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