View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18493_low_8 (Length: 360)
Name: NF18493_low_8
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 46 - 344
Target Start/End: Original strand, 3988808 - 3989107
Alignment:
| Q |
46 |
tacccagagcgcggcctttcttgagcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaaacattgcca |
145 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3988808 |
tacccagagcgtggcctttcttgagcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaaacattgcca |
3988907 |
T |
|
| Q |
146 |
acattttgaggttttgcaaagagcagcaaaatgagtcaattgaatgaaacaaacagcaacaattagttgatggtaaaattctaatacatctgccttataa |
245 |
Q |
| |
|
||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3988908 |
acatttttag-ttttgcaaagagcagcaacatgagtcaattgaatgaaacaaacagcaacaattagttgatggtaaaattctaatacatctgccttataa |
3989006 |
T |
|
| Q |
246 |
aaatgtatcgtcattctttgattgttaattatatacaggtataaatattagttggcaaaatgttttactaaatctta--ctctctctcctacaataagtg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3989007 |
aaatgtatcgtcattctttgattgttaattatataaaggtataaatattagttggcaaaatgttttactaaatcttactctctctctcctacaataagtg |
3989106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 3984013 - 3984147
Alignment:
| Q |
55 |
cgcggcctttcttgagcatagttcactcgtactgtccgaccatgaagttcctgtga----caacataattttagatgctacaagaaacattgccaacatt |
150 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3984013 |
cgcgccctttctgtagcatagttcactcgtactgtccgaccatcaagttcctgtgacaaccaacataa-tttagatgctacaagaaacattgccaaca-- |
3984109 |
T |
|
| Q |
151 |
ttgaggttttgcaaagagcagcaaaatgagtcaattgaa |
189 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
3984110 |
tcga-gttttgcaaagagcagcaaaatgagtcaattgaa |
3984147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 3863993 - 3864132
Alignment:
| Q |
69 |
agcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaaacattgccaacattttgaggttttgcaaagag |
168 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
3863993 |
agcatagttcactcgtaccttccgaccataaagatcctgtgacaacacaattttagatgctacaagaagcattgccaacattttga-gttttgcaaagag |
3864091 |
T |
|
| Q |
169 |
cagcaaaatgagtcaattgaatgaaacaaacagcaacaattagtt |
213 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||| ||| |||| |
|
|
| T |
3864092 |
cagcaaaatgtgtc----gaatgaaacaaacggcaaaaatgagtt |
3864132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 479511 - 479444
Alignment:
| Q |
69 |
agcatagttcactcgtactgtccgaccatgaagttcctgtgacaacataattttagatgctacaagaa |
136 |
Q |
| |
|
|||||||||||||||||| ||||||||| | | ||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
479511 |
agcatagttcactcgtaccctccgaccattaggatcctgcgacaacacaattttaaatgctacaagaa |
479444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University