View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18493_low_9 (Length: 353)
Name: NF18493_low_9
Description: NF18493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18493_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 55163372 - 55163703
Alignment:
| Q |
1 |
ttcaacaacttaccatcaggtgatgtggtggataaacttcttcaagagtggcaaactagttctgtacaaggtatcacagatgagcatggttcaaatagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
55163372 |
ttcaacaacttaccatcaggtgatgtggtggataaacttcttcaagagtggcaaactagttctgtacaaggtatcacagatgagcatggttcacatagct |
55163471 |
T |
|
| Q |
101 |
tttatggattcttaggagaatatagaattagggtcgagtatcgcaacaagactatagattcaactttctctctatgtagaggtgaagaaactaaacatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55163472 |
tttatggattcttaggagaatatagaattagggtcgagtatcgcaacaagactataaattcaactttctctctatgtagaggtgaagaaactaaacatgt |
55163571 |
T |
|
| Q |
201 |
ccctgtgacactgtgacttaatttttatttatgaacctccttaacttttcactagaacctttctttgtaaaccctaccagtccgagttctcagggagaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55163572 |
ccctgtgacactgtgacttaatttttatttatgaacctccttaac--ttcactagaacctttctttgtaaaccctaccagtccgagttctcagggagaat |
55163669 |
T |
|
| Q |
301 |
tgtaaccactctgattggatttacatgagcagtt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
55163670 |
tgtaaccactctgattggatttacatgagcagtt |
55163703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University